Sequence
atgc intronic sequence ATGC exonic sequencegtaggtgtttgatatcaacaaagaaatcttgaatgcaatttgtttatgatactgagagggtacaaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGGTTTGGTTTTATCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G139643_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g12850.1 (Oryza sativa), 3'ss of exon 5
gtaggtgtttgatatcaacaaagaaatcttgaatgcaatttgtttatgat----actgagagggtacaaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGGTTTGGTTTTATCAC
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gtacttattagacttacagataaaaatcttcaacgatttgtagttacaatgaaaactgacaagatattaaattttagATGAGTTGAGGGAGCACTTCTCCCCATATGGTAAGATTGTTGAACATCAAATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGATTTGGTTTTGTCACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30088355|gb|CB886560.1|CB886560EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAG ATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGA
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAGgtaggtgttt ... aaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaagaaatcttgaatgcaatttgtttatgatactgagagggtacaaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGGTTTGGTTTTATCAC
aatttgtttatgata TA-rich tract