1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gacaattttacactgtgttaattattcacatacagaaatcttggacttaatttcattttattgtgcactaggttatttagttctttttttttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACATTTGACAAGTTACTATCTGTTCCTGAGAACGATAGCTGGGTCTATGAAG
species | Zea mays |
transcript | GRMZM2G139374_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACAEST: gi|148965947|gb|EE016863.2|EE016863
genomic: ATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgcttaa ... ttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACA
EST: GCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACAEST: gi|6637103|gb|AW261375.1|AW261375
genomic: GCCCTTAACAAACGGCTTGGAACTAAGgtttgcttaa ... ttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACA
EST: GCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACAEST: gi|71311669|gb|DR792242.1|DR792242
genomic: GCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgcttaa ... ttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACA
EST: ATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACAEST: gi|148946743|gb|EC892009.2|EC892009
genomic: ATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgcttaa ... ttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACA
EST: GAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACAEST: gi|211364276|gb|FL199173.1|FL199173
genomic: GAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgcttaa ... ttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACA
EST: ATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACAEST: gi|211364275|gb|FL199172.1|FL199172
genomic: ATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgcttaa ... ttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACA
EST: ATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACAEST: gi|76011881|gb|DT939051.1|DT939051
genomic: ATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgcttaa ... ttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACA
EST: ATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAG GGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACA
genomic: ATGCTGCTAATATGTGGAAAGAAGCCCTTAACAAACGGCTTGGAACTAAGgtttgcttaa ... ttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACA
cttaatttcattttattgtgcactaggttatttagttctttttttttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACATTTGACAAGTTACTATCTGTTCCTGAGAACGATAGCTGGGTCTATGAAG
acttaat putative branch site (score: 426)
tttagttctttttttt putative PPT
taggttatttagttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacaattttacactgtgttaattattcacatacagaaatcttggacttaatttcattttattgtgcactaggttatttagttctttttttttattttcagGGTCTTGACCTTTCTGAAATCATAGTGGAATCAGAGAAACGTGGGATAACATTTGACAAGTTACTATCTGTTCCTGAGAACGATAGCTGGGTCTATGAAG
- - - - tacactg
- - - - - - - - - - - - - cacatac
- - - - - - - - - - - - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacta