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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctgatcatacttgctatgcaggctgttctgtagttgacattgtttagagatacaaaggtttacagaaagatgctgcatggagatgatctttgttttatttatgatgacactctttttagGCACGTAGTGCTTACCATGGTATTGGCTTGGTCAAATTAATGGGAAGAAGCAGCGGGTTTATTGCAATGCACGCTTCCCTTTCAAGTGGGCAGGTCGATG

Basic information

species Zea mays
transcript GRMZM2G139360_T06
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139360_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g34050.1 (Oryza sativa), 3'ss of exon 8
gtaggctgatcatacttgctatgcaggctgttctgtagttgacattgtttagagatacaaaggtttacagaaagatgctgcatggagatgatctttgttttatttatgatgacactctttttagGCACGTAGTGCTTACCATGGTATTGGCTTGGTCAAATTAATGGGAAGAAGCAGCGGGTTTATTGCAATGCACGCTTCCCTTTCAAGTGGGCAGGTCGATG
                         |   |||   |   ||| |||  ||     |   ||| ||| || |    |      | |||||||   ||        ||       ||| |  ||||||||| || || |||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||
-------------------------gtaagttaaattactgatattaattgtg--tgttaagcttttcaaatcagt----tgtagagatgaaagttcaagggaataaatcactactataattagGCACGAAGCGCATACCATGGCATTGGTTTGGTCAAATTAATGGGAAGAAGCAGTGGCTTCATTGCAATGCATGCTTCCCTTTCAAGTGGGCAGGTTGATG

upper sequence: GRMZM2G139360_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv14s0108g00540.t01 (Vitis vinifera), 3'ss of exon 9
--------gtaggctgatcatacttgctatgcaggctgttctgtagttgacattgtttagagatacaaaggtttacagaaagatgctgcatggagatgatctttgttttatttatgatgacactctttttagGCACGTAGTGCTTACCATGGTATTGGCTTGGTCAAATTAATGGGAAGAAGCAGCGGGTTTATTGCAATGCACGCTTCCCTTTCAAGTGGGCAGGTCGATG
        | | |   | || | ||   |||     |  |       | | |   | |     |  |||   ||     |   |  ||| || | ||| ||||   |    |||| ||  |   ||    |||| |||||||| || ||||| || ||  | || ||| | ||||||||||||||||| ||||| |||||||||||||| |||||||| || ||| | ||| 
gtaagcaagcaagggtaacacatttttcatgtgacttaattcaccaataataaactctgagtttgtaaa---tttggatacccttttgcttgta-atgttcttgaatcctgttataatctcgacctgcc-agGCTCGTAGTGCATATCATGGCATCGGGCTTGTAAAACTGATGGGAAGAAGCAGCGGCTTTATAGCAATGCACGCTTCGCTTTCAAGCGGTCAGATTGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaagatgctgcatggagatgatctttgttttatttatgatgacactctttttagGCACGTAGTGCTTACCATGGTATTGGCTTGGTCAAATTAATGGGAAGAAGCAGCGGGTTTATTGCAATGCACGCTTCCCTTTCAAGTGGGCAGGTCGATG
                                           cactcttttt  CT-rich tract
                     atctttgttttattta  TA-rich tract