1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgttctacaacatggcttgtactccaacttcacaatttgtcccttcaaatataactttgcaaagtgcaactgagatgtgcttttgccttttggtctgcagAAACTGGAATGTTCTAAACCAGTAATTGTTGCTGGGGATCTAAACTGTGCTCGTCAAAGTATTGACATTCACAATCCTCAA
species | Zea mays |
transcript | GRMZM2G139329_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATTACAGGATCAATGATTGGAATCCATGCTTTTCCGACTTCATAAAG AAACTGGAAATGT-CTAAACCAGTAATTGTTGCTGGGGATCTAAACTEST: gi|76288147|gb|DV027715.1|DV027715
genomic: AATTACAGGATCAATGATTGGGATCCATGCTTTAGCGACTTCATAAAGgtgcatccac ... tggtctgcagAAACTGGAA-TGTTCTAAACCAGTAATTGTTGCTGGGGATCTAAACT
EST: AATTACAGGATCAATGATTGCGATCCATGCTTTAGCGACTACATAAAG AAACTGGAATGTTCTAAACCAGTAATTGTTGCTGGGGATCTAAACTGCGCT
genomic: AATTACAGGATCAATGATTGGGATCCATGCTTTAGCGACTTCATAAAGgtgcatccac ... tggtctgcagAAACTGGAATGTTCTAAACCAGTAATTGTTGCTGGGGATCTAAACTGTGCT
caaatataactttgcaaagtgcaactgagatgtgcttttgccttttggtctgcagAAACTGGAATGTTCTAAACCAGTAATTGTTGCTGGGGATCTAAACTGTGCTCGTCAAAGTATTGACATTCACAATCCTCAA
atataac putative branch site (score: 67)
tgcttttgcctttt putative PPT
ataacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttctacaacatggcttgtactccaacttcacaatttgtcccttcaaatataactttgcaaagtgcaactgagatgtgcttttgccttttggtctgcagAAACTGGAATGTTCTAAACCAGTAATTGTTGCTGGGGATCTAAACTGTGCTCGTCAAAGTATTGACATTCACAATCCTCAA
- - -tacaaca
- - - - - - - - - - - - - -cttcaca
- - - - - - - - - - - - - - - - - - - - cccttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaactg