1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatgtcaacaaagctattctaggaatatattattgtgacaaccacagtaagatatcattgaatattcccatctattaacaacacttctacatgattgcagGTTCGTGATTATATTCATGTGGTTGACCTTGCTGAAGGACATCTTTTCGCATTAAAGAAGCTTTTTGAAAGCTCATCTAACATAG
species | Zea mays |
transcript | GRMZM2G138410_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATCGCTAACAATATTTGGAAATAACTACGCAACAAAGGATGGGACAGGG GTTCGTGATTATATTCATGTGGTTGACCTTGCTGAAGGACATCTTTTCGCAEST: gi|6952532|gb|AW424600.1|AW424600
genomic: CATCGCTAACAATATTTGGAAATAACTACGCAACAAAGGATGGGACAGGGgtactgtttc ... atgattgcagGTTCGTGATTATATTCATGTGGTTGACCTTGCTGAAGGACATCTTTTCGCA
EST: CATCGCTAACAATATTTGGAAATAACTACGCAACAAAGGATGGGACAGGG GTTCGTGATTATATTCATGTGGTTGACCTTGCTGAAGGACATCTTTTCGCAEST: gi|211218176|gb|FL316855.1|FL316855
genomic: CATCGCTAACAATATTTGGAAATAACTACGCAACAAAGGATGGGACAGGGgtactgtttc ... atgattgcagGTTCGTGATTATATTCATGTGGTTGACCTTGCTGAAGGACATCTTTTCGCA
EST: CATCGCTAACAATATTTGGAAATAACTACGCAACAAAGGATGGGACAGGG GTTCGTGATTATATTCATGTGGTTGACCTTGCTGAAGGACATCTTTTCGCA
genomic: CATCGCTAACAATATTTGGAAATAACTACGCAACAAAGGATGGGACAGGGgtactgtttc ... atgattgcagGTTCGTGATTATATTCATGTGGTTGACCTTGCTGAAGGACATCTTTTCGCA
agtaagatatcattgaatattcccatctattaacaacacttctacatgattgcagGTTCGTGATTATATTCATGTGGTTGACCTTGCTGAAGGACATCTTTTCGCATTAAAGAAGCTTTTTGAAAGCTCATCTAACATAG
tattaac putative branch site (score: 59)
atatcattgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtcaacaaagctattctaggaatatattattgtgacaaccacagtaagatatcattgaatattcccatctattaacaacacttctacatgattgcagGTTCGTGATTATATTCATGTGGTTGACCTTGCTGAAGGACATCTTTTCGCATTAAAGAAGCTTTTTGAAAGCTCATCTAACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - -caacaaa
- - - - - - - - - - - - - - - - - - - caaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaca