1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gagaaaaacctgtcaggtgtttttaactctcttaagacggtgtaaatgttagtgcttgcctcctgttagattgaatggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
species | Zea mays |
transcript | GRMZM2G137930_T03 |
intron # | 5 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|32845833|gb|CD985514.1|CD985514
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGAEST: gi|60345089|gb|DN212062.1|DN212062
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|12045955|gb|BF727990.1|BF727990
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|78116468|gb|DV534855.1|DV534855
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|71761130|gb|DR959067.1|DR959067
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|211164202|gb|FL365728.1|FL365728
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|60400610|gb|DN233417.1|DN233417
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGAEST: gi|60352136|gb|DN219109.1|DN219109
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGAEST: gi|6973369|gb|AW438063.1|AW438063
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGCTGCTGGGAACGACTTTCTACCAGCGAEST: gi|20301303|gb|BQ164246.1|BQ164246
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|33104183|gb|CF064143.1|CF064143
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGAEST: gi|60393905|gb|DN226775.1|DN226775
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|21760122|gb|BQ635663.1|BQ635663
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|60394081|gb|DN226951.1|DN226951
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGAEST: gi|60396637|gb|DN229505.1|DN229505
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|6973370|gb|AW438064.1|AW438064
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGAEST: gi|60400269|gb|DN233076.1|DN233076
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGAEST: gi|31405950|gb|CD484682.1|CD484682
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|19822092|gb|BQ048116.1|BQ048116
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|76287731|gb|DV027299.1|DV027299
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|6827019|gb|AW330662.1|AW330662
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|60395705|gb|DN228575.1|DN228575
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGAEST: gi|71445655|gb|DR826705.1|DR826705
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|71758865|gb|DR956802.1|DR956802
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|76923128|gb|DV169344.1|DV169344
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|37397100|gb|CF635845.1|CF635845
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|78179626|gb|DV549999.1|DV549999
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTEST: gi|60401073|gb|DN233880.1|DN233880
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTT
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|71444626|gb|DR825676.1|DR825676
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAEST: gi|60342157|gb|DN209130.1|DN209130
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTTCTACCAGCGAEST: gi|91870562|gb|EB400946.1|EB400946
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
EST: GGAGCTCCCACCTCCCCGCTTGGCTGAAATCAGGCGCTTTTTCGAGGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTTTACCAGCGA
genomic: GGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttt ... agacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGA
atgttagtgcttgcctcctgttagattgaatggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
ttctttaac putative branch site
tttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaaaaacctgtcaggtgtttttaactctcttaagacggtgtaaatgttagtgcttgcctcctgttagattgaatggtttctttaaccgagacattcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC