Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA

Basic information

species Zea mays
transcript GRMZM2G137930_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 3'ss of exon 4
gtaaagcaatgttgttttcctcccgctgaagtcttatt-gtgaagctatatttctt-gccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
||||| ||| |   ||    |    |   | | || || ||||| | |||||| |        ||||| || |  |      | |||   | | ||  |||||  |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
gtaaaacaaggcgattcaattgattcatcattttttttagtgaaaccatatttttccagtgactctaaaatgttttgtacatcatttggttgtatgcacatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTGGATGTGCTGGTTA

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g74350.1 (Oryza sativa), 3'ss of exon 5
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
||||||  |  | ||||  |||         |||| || || |  |  | || |    || |    ||| |   | |||| ||  ||   ||    ||||  ||||| ||||| || || || || ||||| || || |||||||||||||| ||||||||||||||||| || || || ||||||||||||||||| ||||| |
gtaaagatacat-gtttcactc--------atcttcttctgcacttgcagttttcctaagct----tatgtttccttttctgtacca---tgca-acatgctcagGTAGACCGAGTTCTCTACTCTTCAGTCGTCTATCCTCACAACTATGGGTTCATTCCTCGCACGCTGTGCGACGATAGTGATCCTTTGGATGTGCTGGTCA

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA03G33000.6 (Glycine max), 3'ss of exon 6
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
                        | || | ||   |||   || ||| |||  |   | |  || ||| |     | |       |||||      |||  ||| | |||||||| || || ||||||||||| || |||||||| ||||| || || || || ||  ||||||| |||||||||||  |||||||  || |||
------------------------gttgcaatc--gttgcagagttattttttattatattgttactatgtcaagttctaaacactaatct------atgaacagATCGACCGTGTTCTTTACTCATCAGTTGTGTATCCTCACAATTATGGGTTTATCCCACGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA13G19500.2 (Glycine max), 3'ss of exon 4
gtaaagcaatgttgttttcctcccgctgaagtctta-ttgtgaagctatatttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
                           | | || |  |||   |||| | ||  |  |  |||  | |  ||       |     | ||  ||  |  |||||||||| || ||| | || || |||||||||||||| |||||||||||||| || ||||| || ||  ||||||| ||| |||||||  |||||||  ||||||
---------------------------gtaatcatggttgcctagct-ttttcttcccttgttacacttgttgacaggatattgctgaacatgcatctatgtgcagGTTGATCGTATACTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATTCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTA

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA19G35710.1 (Glycine max), 3'ss of exon 6
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatatttactcctttccgtttc--aatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
                              ||  || |  |  |||  | || ||  |  |||||    |||||   |   ||| |  ||      |  |||  ||| | ||||| ||||| || |||||||||||||| |||||||||||||| || || ||||| ||  ||||||| |||||||||||  |||||||  || |||
------------------------------gttgtaata-gttgctg-agttattttcgattcta-cggttactaagtcaagttgctaaacactaatctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaaagcaatgttgttttcctcccgctgaagtcttattgtga-agctatatttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgc--agGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
                        |   || | | ||||    | || | ||   || |  ||  | ||||             |  || || |   ||| | |  |||| |||||| | || || ||||| || || ||||| ||||||||||| |||||||| || || |||||||| |||||||| ||| | ||||| || || |
------------------------gtataaatttgattgcattaactttcttcgctgtccctttcattattagaggtacgattgtctaaactttacacatattctcagGTCGACCGTATTCTTTACTCATCTGTCGTATACCCACACAACTATGGGTTCATTCCGCGTACCCTTTGTGAGGACAGTGACCCTATTGATGTTCTTGTCA

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaata--tttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
                          | | || || |    || | || ||||| |  | |  |   |  |  ||   |    | |  | | | | | ||||||||||| |||||||||||||| || |||||||| ||||| ||||||||||| || || || || || || ||||| |||| ||| ||  |||||||  ||||||
----------------------gtaattaggtgttct----aatccatttttctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
lower sequence: EFJ27171 (Selaginella moellendorffii), 3'ss of exon 2
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatattt-actcctttcc-gtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
                                               | |   | |   | |||  | |||  || |||||| |||    | ||   |    | ||||| || || || || ||||| || || ||||| || ||||||||||||||  |||| |||||||| |||||||||| ||| ||  | || || || || |
----------------------------------------------gtgtgaatagtttgatcttttctttcgctactttccagttatgctttggtcgttcttccagGTTGATCGAGTCCTTTATTCCTCGGTGGTTTATCCACACAACTATGGATTTGTTCCACGCACGCTGTGTGAAGACAATGACCCGCTTGACGTTCTTGTGA

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
lower sequence: EFJ27219 (Selaginella moellendorffii), 3'ss of exon 3
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
                                                   | |          || |   | |        ||   || | |   | || |||||| ||| | |||||||| || || || || ||||| ||||||||||| ||||||||||| || || || |||||||  ||||| ||||| ||  ||||  
--------------------------------------------------gtttgattgaggagaacaaacattttggatacttcttatttttaaac-tgcgcagGTTGACAGGGTGCTGTACTCGTCGGTCGTGTACCCCCACAACTATGGTTTCATTCCTCGTACTCTGTGCGAAGACAACGATCCATTGGACGTCTTGGTCC

upper sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
lower sequence: EFJ33440 (Selaginella moellendorffii), 3'ss of exon 3
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatattt--actcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
                                               | |   |    ||  | || ||||    | |||    ||| ||          || |||||| ||| | |||||||| || || || || ||||| ||||||||||| ||||||||||| || || || |||||||  ||||| ||||| ||  ||||  
----------------------------------------------gtttgattgaggagaacaaacattttggatacttcttattttaaaac-------tgcgcagGTTGACAGGGTGCTGTACTCGTCGGTCGTGTACCCCCACAACTATGGCTTCATTCCTCGTACTCTGTGCGAAGACAACGATCCATTGGACGTCTTGGTCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9742923|gb|BE519071.1|BE519071
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|91878963|gb|EB408920.1|EB408920
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|91870587|gb|EB400969.1|EB400969
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|211164202|gb|FL365728.1|FL365728
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|21760122|gb|BQ635663.1|BQ635663
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGCTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|60345089|gb|DN212062.1|DN212062
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|9794549|gb|BE552857.1|BE552857
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|89252994|gb|DY624780.1|DY624780
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|23357487|gb|BU645136.1|BU645136
EST:     GGGGCAGCAAGGNTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|211153963|gb|FL101500.1|FL101500
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|78109928|gb|DV528343.1|DV528343
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|60400269|gb|DN233076.1|DN233076
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGGGTGTTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|22521401|gb|BU080212.1|BU080212
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|21432147|gb|BQ547637.1|BQ547637
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|60352136|gb|DN219109.1|DN219109
EST:     ATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGGGTGTTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: ATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|6973369|gb|AW438063.1|AW438063
EST:     AAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: AAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|6973370|gb|AW438064.1|AW438064
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|60396637|gb|DN229505.1|DN229505
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|60393905|gb|DN226775.1|DN226775
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|71441944|gb|DR822994.1|DR822994
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|76923128|gb|DV169344.1|DV169344
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|22546627|gb|BU098938.1|BU098938
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|86471929|gb|DY238299.1|DY238299
EST:     GGGGCAGCAGGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAGG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|60397937|gb|DN230753.1|DN230753
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|23357695|gb|BU645344.1|BU645344
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|71445656|gb|DR826706.1|DR826706
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|91870563|gb|EB400947.1|EB400947
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACCATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|211043567|gb|FL332011.1|FL332011
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|74035433|gb|DT535921.1|DT535921
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCGTCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|31405950|gb|CD484682.1|CD484682
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|76287732|gb|DV027300.1|DV027300
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|19822092|gb|BQ048116.1|BQ048116
EST:     GGCAGC-AGGTTAAATATGAACTTGACAAGTAAAACTGGACTGATCAAG                         GTGGTACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATT
genomic: GGCAGCAAGGTTAAATATGAACTTGACAAG-AAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGG-ACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATT
EST: gi|76287731|gb|DV027299.1|DV027299
EST:     GACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTT-CCCTCACAACTATGGATTC
genomic: GACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|20301303|gb|BQ164246.1|BQ164246
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|60395705|gb|DN228575.1|DN228575
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGGGTGTTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|71445655|gb|DR826705.1|DR826705
EST:     CAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: CAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|22472706|gb|BU037186.1|BU037186
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|71758865|gb|DR956802.1|DR956802
EST:     AGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: AGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|60401073|gb|DN233880.1|DN233880
EST:     TAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: TAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|31557952|gb|CD527164.1|CD527164
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|60342157|gb|DN209130.1|DN209130
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGGGTGTTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|22133615|gb|BQ833806.1|BQ833806
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: gi|71444627|gb|DR825677.1|DR825677
EST:     GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
          ttctaat  putative branch site (score: 2)
        agttctaatattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA