1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtgagtgaaatcttgacatccctcattttcgtctgtcatgtttttgttattgtaaagtgctgagaactgtactggcagCTGATCGTCGTGCTCAATTTGAAAAGCTGGAATATACTGACGACGACTACCAAAAAGAGCTAGAGCATATTGAGAAG
species | Zea mays |
transcript | GRMZM2G137409_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCCAGGAAATTTTG CTGATCGTCGTGCTCAATTTGAAAAGCTGGAATATACTGACGACGACTACCEST: gi|32929460|gb|CF034272.1|CF034272
genomic: AAGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCCAGGAAATTTTGgtgagtgaaa ... gtactggcagCTGATCGTCGTGCTCAATTTGAAAAGCTGGAATATACTGACGACGACTACC
EST: AAGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCCAGGAAATTTTG CCGATCGTCGTGCTCAATTTGAAAAGCTGGAATATACTGACGACGACTACCEST: gi|32929373|gb|CF034185.1|CF034185
genomic: AAGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCCAGGAAATTTTGgtgagtgaaa ... gtactggcagCTGATCGTCGTGCTCAATTTGAAAAGCTGGAATATACTGACGACGACTACC
EST: AAGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCCAGGAAATTTTG CTGATCGTCGTGCTCAATTTGAAAAGCTGGAATATACTGACGACGACTACCEST: gi|148957404|gb|EC903459.2|EC903459
genomic: AAGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCCAGGAAATTTTGgtgagtgaaa ... gtactggcagCTGATCGTCGTGCTCAATTTGAAAAGCTGGAATATACTGACGACGACTACC
EST: AGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCCCAG-AAATTTTG CTGATCGTCGTGCTCATTTTGAAAAGCTGGAATATACTGACGACGACTACEST: gi|71419166|gb|DR804674.1|DR804674
genomic: AGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCC-AGGAAATTTTGgtgagtgaaa ... gtactggcagCTGATCGTCGTGCTCAATTTGAAAAGCTGGAATATACTGACGACGACTAC
EST: AGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCCCAGGAA-TTTTG CTGATCGTCGTGCTNCA-TTTGAAAAGCTGGAATATACTGACGACGACTAC
genomic: AGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCC-AGGAAATTTTGgtgagtgaaa ... gtactggcagCTGATCGTCGTGCT-CAATTTGAAAAGCTGGAATATACTGACGACGACTAC
cattttcgtctgtcatgtttttgttattgtaaagtgctgagaactgtactggcagCTGATCGTCGTGCTCAATTTGAAAAGCTGGAATATACTGACGACGACTACCAAAAAGAGCTAGAGCATATTGAGAAG
tttttgttattgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgaaatcttgacatccctcattttcgtctgtcatgtttttgttattgtaaagtgctgagaactgtactggcagCTGATCGTCGTGCTCAATTTGAAAAGCTGGAATATACTGACGACGACTACCAAAAAGAGCTAGAGCATATTGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA