1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttgctgtgtttataatgatgttcatgattcagattttttccagtgaaattttaggccaaaaatgtgaaatttatttatttttcctcagGAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAGTACCAGAAGCAGTGTTATGAG
species | Zea mays |
transcript | GRMZM2G136803_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAG GAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAGEST: gi|78091048|gb|DV519422.1|DV519422
genomic: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAGgttgctgtgt ... ttttcctcagGAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAG
EST: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAG GAGAAGTTTGGATCCTTTEST: gi|7145217|gb|AW506698.1|AW506698
genomic: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAGgttgctgtgt ... ttttcctcagGAGAAGTTTGGATCCTTT
EST: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAG GAGAAGTTTGGATCCTCTTGGACAGTCATTGCAGCCAATTTTCTAAATGAGEST: gi|211541851|gb|FL147713.1|FL147713
genomic: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAGgttgctgtgt ... ttttcctcagGAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAG
EST: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAG GAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAGEST: gi|211153097|gb|FL147716.1|FL147716
genomic: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAGgttgctgtgt ... ttttcctcagGAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAG
EST: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAG GAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAGEST: gi|78120827|gb|DV539211.1|DV539211
genomic: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAGgttgctgtgt ... ttttcctcagGAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAG
EST: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAG GAGAAGTTTGGATCCTTTTGGACAGTCCTTGCAGCCAATTTTCTAAATGAG
genomic: GGGATTTTAATCGGATGAGCCAACCATACATTCGTCAGGAAATACTGGAGgttgctgtgt ... ttttcctcagGAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAG
ttttttccagtgaaattttaggccaaaaatgtgaaatttatttatttttcctcagGAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAGTACCAGAAGCAGTGTTATGAG
tttatttatttttcct CT-rich tract
aaaaatgtgaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgctgtgtttataatgatgttcatgattcagattttttccagtgaaattttaggccaaaaatgtgaaatttatttatttttcctcagGAGAAGTTTGGATCCTTTTGGACAGTCATTGCAGCCAATTTTCTAAATGAGTACCAGAAGCAGTGTTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC