1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagaacacttttgatagttttttttgtttttgtttttttgcagtttgtaatttcatatacaaatcattacactaagtttactcttttgcagGTATCAGTGCATTGAGAATGATTTGTTATATCCTCTACGCACACCTCACAATATCGCTCCATACAAATCTAAGGGCCTTGACAGGGCCTCAGAGCTCAAT
species | Zea mays |
transcript | GRMZM2G136293_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGGCTCTGCAAACAAAT GTATCAGTGCATTGAGAATGATTTGTTATATCCTCTACGCACACCTCACAAEST: gi|5791256|gb|AI978048.1|AI978048
genomic: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGGCTCTGCAAACAAATgtaagaacac ... tcttttgcagGTATCAGTGCATTGAGAATGATTTGTTATATCCTCTACGCACACCTCACAA
EST: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGGCTCTGCAAACAAAT GTATCAGTGCATTGAGAATGATTTGTTATATCCTCTACGCACACCTCACAAEST: gi|113702216|gb|EE679720.1|EE679720
genomic: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGGCTCTGCAAACAAATgtaagaacac ... tcttttgcagGTATCAGTGCATTGAGAATGATTTGTTATATCCTCTACGCACACCTCACAA
EST: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGGCTCTGCAAACAAAT GTATCAGTGCATTGAGAATGATTTGTTATATCCTCTACGCACACCTCACAA
genomic: AAGCATGTCATCAATCTTTCCAATGTGGTTGATAGGCTCTGCAAACAAATgtaagaacac ... tcttttgcagGTATCAGTGCATTGAGAATGATTTGTTATATCCTCTACGCACACCTCACAA
tttgcagtttgtaatttcatatacaaatcattacactaagtttactcttttgcagGTATCAGTGCATTGAGAATGATTTGTTATATCCTCTACGCACACCTCACAATATCGCTCCATACAAATCTAAGGGCCTTGACAGGGCCTCAGAGCTCAAT
tttactctttt CT-rich tract
taatttcatatacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacacttttgatagttttttttgtttttgtttttttgcagtttgtaatttcatatacaaatcattacactaagtttactcttttgcagGTATCAGTGCATTGAGAATGATTTGTTATATCCTCTACGCACACCTCACAATATCGCTCCATACAAATCTAAGGGCCTTGACAGGGCCTCAGAGCTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA