1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ataaggatattgctgttcctgtgttcagcaagccattttccacactgctaacccacttgaagtctgattcagagatcacttcctattcttcttcttgtagACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGGAGGCTGAGGCAAAGGGACATGGATGAGTGGATGAGACACCATCAACTCCCATCTCATCTTC
species | Zea mays |
transcript | GRMZM2G135651_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGCTATCAGTCTCATACTCTTTGCTCAGTTGATTGGCAAAATGCAG ACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGGAGGCTGAGGCAAEST: gi|20803301|gb|BQ294351.1|BQ294351
genomic: TTGGTGCTATCAGTCTCATACTCTTTGCTCAGTTGATTGGCAAAATGCAGgtagtgtcat ... cttcttgtagACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGGAGGCTGAGGCAA
EST: TTGGTGCTATCAGTCTCATACTCTTTGCTCAGATGATTGGCAAAATGCAG ACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGGAGGCTGAGGCAAEST: gi|89247510|gb|DY619296.1|DY619296
genomic: TTGGTGCTATCAGTCTCATACTCTTTGCTCAGTTGATTGGCAAAATGCAGgtagtgtcat ... cttcttgtagACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGGAGGCTGAGGCAA
EST: TTGGTGCTATCAGTCTCATACTCTTTGCTCAGTTGATTGGCAAAATGCAG ACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGAAGGCTGAGGCAAEST: gi|26456827|gb|CA828410.1|CA828410
genomic: TTGGTGCTATCAGTCTCATACTCTTTGCTCAGTTGATTGGCAAAATGCAGgtagtgtcat ... cttcttgtagACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGGAGGCTGAGGCAA
EST: TTGGTGCTATCAGTCTCATACTCTTTGCTCAGTTGATTGGCAAAATGCAG ACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGGAGGCTGAGGCAA
genomic: TTGGTGCTATCAGTCTCATACTCTTTGCTCAGTTGATTGGCAAAATGCAGgtagtgtcat ... cttcttgtagACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGGAGGCTGAGGCAA
tgctaacccacttgaagtctgattcagagatcacttcctattcttcttcttgtagACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGGAGGCTGAGGCAAAGGGACATGGATGAGTGGATGAGACACCATCAACTCCCATCTCATCTTC
tcacttcctattcttc CT-rich tract
tattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaggatattgctgttcctgtgttcagcaagccattttccacactgctaacccacttgaagtctgattcagagatcacttcctattcttcttcttgtagACATACCTGCAGTCTATCAGTAAAAGGCTTGAAGAGTGGAGGCTGAGGCAAAGGGACATGGATGAGTGGATGAGACACCATCAACTCCCATCTCATCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA