1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttatgttgttgttagcttacaatagaaagtagtttttttggttgttgcagtgtttattatgatatatagctgaagcctatcatttatcttgcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGTGAGTTTAT
species | Zea mays |
transcript | GRMZM2G135568_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAEST: gi|31349910|gb|CD434267.1|CD434267
genomic: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCA
EST: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAEST: gi|88748264|gb|DY532405.1|DY532405
genomic: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCA
EST: AAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGGTGTGCAA-TTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAEST: gi|149083911|gb|EE173287.2|EE173287
genomic: AAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCA
EST: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGTTGTGCAATTTTCEST: gi|71757754|gb|DR955691.1|DR955691
genomic: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacca ... gcctccatagTCTGCTGGTGTGCAATTTTC
EST: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAEST: gi|149083910|gb|EE173286.2|EE173286
genomic: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCA
EST: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAEST: gi|149061139|gb|EE157399.2|EE157399
genomic: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCA
EST: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAEST: gi|149061138|gb|EE157398.2|EE157398
genomic: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCA
EST: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAEST: gi|71757755|gb|DR955692.1|DR955692
genomic: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCA
EST: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAEST: gi|89249738|gb|DY621524.1|DY621524
genomic: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCA
EST: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCA
genomic: GAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCA
tgcagtgtttattatgatatatagctgaagcctatcatttatcttgcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGTGAGTTTAT
tttatcttgcctcc CT-rich tract
tgtttattatgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgttgttgttagcttacaatagaaagtagtttttttggttgttgcagtgtttattatgatatatagctgaagcctatcatttatcttgcctccatagTCTGCTGGTGTGCAATTTTCAAATCGCCCAAATGTTGTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGTGAGTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT