1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcggccagagcagagctgatgcatgcccattcgttctccttccctcttgctcgtctcttaattagaagcagatcgtcttctgtcctgcagCTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGACGTTCTCGACGAGAAGCTCCGGAACGCCACAACGCTCGGCGCGACGCAC
species | Zea mays |
transcript | GRMZM2G135526_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGGCGGGCGACTCGGTGGCCGTGATCGGAGTCGGAGGGGTCGGATCGAG CTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGAEST: gi|60345578|gb|DN212551.1|DN212551
genomic: CGGGCGGGCGACTCGGTGGCCGTGATCGGAGTCGGAGGGGTCGGATCGAGgtcggccaga ... tgtcctgcagCTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGA
EST: CGGGCGGGCGACTCGGTGGCCGTGATCGGAGTCGGAGGGGTCGGATCGAG CTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGAEST: gi|88755652|gb|DY539793.1|DY539793
genomic: CGGGCGGGCGACTCGGTGGCCGTGATCGGAGTCGGAGGGGTCGGATCGAGgtcggccaga ... tgtcctgcagCTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGA
EST: CGGGCGGGCGACTCGGTGGCCGTGATCGGAGTCGGAGGGGTCGGATCGAG CTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGAEST: gi|78106783|gb|DV525201.1|DV525201
genomic: CGGGCGGGCGACTCGGTGGCCGTGATCGGAGTCGGAGGGGTCGGATCGAGgtcggccaga ... tgtcctgcagCTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGA
EST: CGGGCGGGCGACTCGGTGGCCGTGATCGGAGTCGGAGGGGTCGGATCGAG CTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGAEST: gi|76012940|gb|DT940110.1|DT940110
genomic: CGGGCGGGCGACTCGGTGGCCGTGATCGGAGTCGGAGGGGTCGGATCGAGgtcggccaga ... tgtcctgcagCTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGA
EST: CGGGCGGGCGACTCGGTGGCCGTGATCGGAGTCGGAGGGGTCGGATCGAG CTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGA
genomic: CGGGCGGGCGACTCGGTGGCCGTGATCGGAGTCGGAGGGGTCGGATCGAGgtcggccaga ... tgtcctgcagCTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGA
ctccttccctcttgctcgtctcttaattagaagcagatcgtcttctgtcctgcagCTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGACGTTCTCGACGAGAAGCTCCGGAACGCCACAACGCTCGGCGCGACGCAC
tcttaat putative branch site (score: 1)
tcgtcttctgtcct putative PPT
ttaattagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggccagagcagagctgatgcatgcccattcgttctccttccctcttgctcgtctcttaattagaagcagatcgtcttctgtcctgcagCTGTCTGCAGATAGCAAAGGCCTTTGGAGCTTCCGAGGTCATCGCGGTGGACGTTCTCGACGAGAAGCTCCGGAACGCCACAACGCTCGGCGCGACGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC