1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agaccgataaggcgataagtcgatgttagtaactgctcaaatgtattgcataactctgactagctttatttaacttgtccatcgcttcaacatgacacagATATGGCAATAGAAGGATAGAATCATCAGGTGAGATACAGTTTCTTCCTTCTCGTTGCATTGTTGGGCAAGAGCAGCATGTTCATGGCAAGGACCCAGTT
species | Zea mays |
transcript | GRMZM2G135446_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCAGGGAAAAAGATATCTTTAATCACTCGAATTCTTCTGCCTTCTCGAG ATATGGCAATAGAAGGATAGAATCATCAGGTGAGATACAGTTTCEST: gi|19351718|gb|BM896250.1|BM896250
genomic: TTCAGGGAAAAAGATATCTTTAATCACTCGAATTCTTCTGCCTTCTCGAGgtactttgtg ... catgacacagATATGGCAATAGAAGGATAGAATCATCAGGTGAGATACAGTTTC
EST: TTCAGGGAAAAAGATATCTTTAATCACTCGAATTCTTCTGCCTTCTCGAG ATATGGCAATAGAAGGATAGAATCATCAGGTGAGATACAGNTTCTTCCTTCEST: gi|89252026|gb|DY623812.1|DY623812
genomic: TTCAGGGAAAAAGATATCTTTAATCACTCGAATTCTTCTGCCTTCTCGAGgtactttgtg ... catgacacagATATGGCAATAGAAGGATAGAATCATCAGGTGAGATACAGTTTCTTCCTTC
EST: TTCAGGGAAAAAGATATCTTTAATCACTCGAATTCTTCTGCCTTCTCGAG ATATGGCAATAGAAGGATAGAATCATCAGGTGAGATACAGTTTCTTCCTTCEST: gi|13490568|gb|BG517332.1|BG517332
genomic: TTCAGGGAAAAAGATATCTTTAATCACTCGAATTCTTCTGCCTTCTCGAGgtactttgtg ... catgacacagATATGGCAATAGAAGGATAGAATCATCAGGTGAGATACAGTTTCTTCCTTC
EST: AATTCTTCTGCCTTCTCGAG ATATGGCAATAGAAGGATAGAATCATCATGTGAGATACAGTTTCTTCCTTC
genomic: AATTCTTCTGCCTTCTCGAGgtactttgtg ... catgacacagATATGGCAATAGAAGGATAGAATCATCAGGTGAGATACAGTTTCTTCCTTC
ttgcataactctgactagctttatttaacttgtccatcgcttcaacatgacacagATATGGCAATAGAAGGATAGAATCATCAGGTGAGATACAGTTTCTTCCTTCTCGTTGCATTGTTGGGCAAGAGCAGCATGTTCATGGCAAGGACCCAGTT
atttaac putative branch site (score: 26)
tttatttaacttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaccgataaggcgataagtcgatgttagtaactgctcaaatgtattgcataactctgactagctttatttaacttgtccatcgcttcaacatgacacagATATGGCAATAGAAGGATAGAATCATCAGGTGAGATACAGTTTCTTCCTTCTCGTTGCATTGTTGGGCAAGAGCAGCATGTTCATGGCAAGGACCCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - -actgctc
- - - - - - - - - - - - - - - - - - - - - - attgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcttca