1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtcatcatgtcaattaaacaacaatttttgttctaaagtttcgttaatttaatcatgaccgctattgttcatgaccctgtgatgctgttctttgtttcagCTTTCTAATGCTGGAGGCAGAATTATCATTGCAAGCGATGGTGTGTGGGATGATTTGACTTGTGAAATGGCTCTTGATTGTTCCCGTGGGTTCTCATCAG
species | Zea mays |
transcript | GRMZM2G135444_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGATGTTGGTGAATGCATCATTGCTGTTCCTCATGTTAAGCAAGTGAAG CTTTCTAATGCTGGAGGCAGAATTATCATTGEST: gi|149096893|gb|EE182691.2|EE182691
genomic: TTGATGTTGGTGAATGCATCATTGCTGTTCCTCATGTTAAGCAAGTGAAGgtttgttcac ... tttgtttcagCTTTCTAATGCTGGAGGCAGAATTATCATTG
EST: TTGATGTTGGTGAATGCATCATTGCTGTTCCTCATGTTAAGCAAGTGAAG CTTTCTAATGCTG
genomic: TTGATGTTGGTGAATGCATCATTGCTGTTCCTCATGTTAAGCAAGTGAAGgtttgttcac ... tttgtttcagCTTTCTAATGCTG
aatttaatcatgaccgctattgttcatgaccctgtgatgctgttctttgtttcagCTTTCTAATGCTGGAGGCAGAATTATCATTGCAAGCGATGGTGTGTGGGATGATTTGACTTGTGAAATGGCTCTTGATTGTTCCCGTGGGTTCTCATCAG
atttaat putative branch site (score: 390)
ctgttctttgtttc putative PPT
tattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatcatgtcaattaaacaacaatttttgttctaaagtttcgttaatttaatcatgaccgctattgttcatgaccctgtgatgctgttctttgtttcagCTTTCTAATGCTGGAGGCAGAATTATCATTGCAAGCGATGGTGTGTGGGATGATTTGACTTGTGAAATGGCTCTTGATTGTTCCCGTGGGTTCTCATCAG
- - -catgtca
- - - - - - - - - caacaat
- - - - - - - - - - - - -ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgctg