1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcgcgttgctgtcatgagtttctcagtttcatctgtcacaaaaactgttcttcagcgtgtagagttttatcactatgacttctgcattgttgatcaaagtttggcaatgccttcctgatttcaccgcagTCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGGGCATTGCTTACTGTCTTGAGCACATGCATCAGCTGCAAACACCAGCTGC
species | Zea mays |
transcript | GRMZM2G135359_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATG TCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGGEST: gi|78117674|gb|DV536061.1|DV536061
genomic: GATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATGgtaagcgcgt ... ttcaccgcagTCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGG
EST: TTTTTGAGCATCTCCATG TCAGGGAAGCAGAGAAGCTTGATTGGATGGCAGGGCTCAGGATATCCATGGEST: gi|149070911|gb|EE159318.2|EE159318
genomic: TTTTTGAGCATCTCCATGgtaagcgcgt ... ttcaccgcagTCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGG
EST: ATGGTATTTGAATATGCTCCAAATGGGGACACTTTTTGAGCATCTCCATG TCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGGEST: gi|76012816|gb|DT939986.1|DT939986
genomic: ATGGTATTTGAATATGCTCCAAAT-GGGACACTTTTTGAGCATCTCCATGgtaagcgcgt ... ttcaccgcagTCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGG
EST: GATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATG TCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGGEST: gi|211162831|gb|FL160688.1|FL160688
genomic: GATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATGgtaagcgcgt ... ttcaccgcagTCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGG
EST: GATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATG TCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGG
genomic: GATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATGgtaagcgcgt ... ttcaccgcagTCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGG
atgacttctgcattgttgatcaaagtttggcaatgccttcctgatttcaccgcagTCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGGGCATTGCTTACTGTCTTGAGCACATGCATCAGCTGCAAACACCAGCTGC
tcctgat putative branch site (score: 3)
tttcacc CT-rich tract
aaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgcgttgctgtcatgagtttctcagtttcatctgtcacaaaaactgttcttcagcgtgtagagttttatcactatgacttctgcattgttgatcaaagtttggcaatgccttcctgatttcaccgcagTCAGGGAAGCAGAGAAGCTTGACTGGATGGCACGGCTCAGGATATCCATGGGCATTGCTTACTGTCTTGAGCACATGCATCAGCTGCAAACACCAGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC