1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tcaatatttatcttttgtttctgaccatatttctctcataatgttagatgccttttcaccaaaattttcttaactcatgaccaattttcaacctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGCACTCTTGAAGCCACATGAAAGGATCATGGCTTTGGATCTTCCTCACGG
species | Zea mays |
transcript | GRMZM2G135283_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211286141|gb|FL173722.1|FL173722
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: CAGAAACGTGCTTTGGAGGGCTT-CCGTTTGGACCGGGCGAAATGGGGAG TGAATGTGCACCCTCTATCCGGNTCGCCCGCCA-CTTCCATGGATACACTGEST: gi|21987802|gb|BQ779330.1|BQ779330
genomic: CAGAAACGTGCTTTGGAGG-CTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211284346|gb|FL173719.1|FL173719
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTCGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|149078907|gb|EE167727.2|EE167727
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211349901|gb|FL349172.1|FL349172
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211379738|gb|FL173738.1|FL173738
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: AGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGATAATGGGGGAG TGAATGTGCAACCTCTATCCGGEST: gi|148973319|gb|EE024404.2|EE024404
genomic: AGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGA-AATGGGG-AGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|149012532|gb|EE042603.2|EE042603
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|148946029|gb|EC891328.2|EC891328
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|149048905|gb|EE048404.2|EE048404
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|148958252|gb|EC904466.2|EC904466
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211286148|gb|FL173729.1|FL173729
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|60351519|gb|DN218492.1|DN218492
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: GGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|71299012|gb|DR785498.1|DR785498
genomic: GGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|148930308|gb|EE284699.2|EE284699
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|60346600|gb|DN213573.1|DN213573
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|148969981|gb|EE020895.2|EE020895
genomic: TTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211284347|gb|FL173720.1|FL173720
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|149081312|gb|EE170425.2|EE170425
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211379744|gb|FL173744.1|FL173744
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTCGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGGTCGCCCGCCAAEST: gi|148947246|gb|EC892606.2|EC892606
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAA
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|149089957|gb|EE179246.2|EE179246
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|148945831|gb|EC891120.2|EC891120
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
agatgccttttcaccaaaattttcttaactcatgaccaattttcaacctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGCACTCTTGAAGCCACATGAAAGGATCATGGCTTTGGATCTTCCTCACGG
tcttaac putative branch site (score: 314)
cctttat putative PPT
aaaattttcttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatatttatcttttgtttctgaccatatttctctcataatgttagatgccttttcaccaaaattttcttaactcatgaccaattttcaacctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGCACTCTTGAAGCCACATGAAAGGATCATGGCTTTGGATCTTCCTCACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC