1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaatatttatcttttgtttctgaccatatttctctcataatgttagatgccttttcaccaaaattttcttaactcatgaccaattttcaacctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGCACTCTTGAAGCCACATGAAAGGATCATGGCTTTGGATCTTCCTCACGG
species | Zea mays |
transcript | GRMZM2G135283_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211286141|gb|FL173722.1|FL173722
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: CAGAAACGTGCTTTGGAGGGCTT-CCGTTTGGACCGGGCGAAATGGGGAG TGAATGTGCACCCTCTATCCGGNTCGCCCGCCA-CTTCCATGGATACACTGEST: gi|67019160|gb|CO447909.1|CO447909
genomic: CAGAAACGTGCTTTGGAGG-CTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|21987802|gb|BQ779330.1|BQ779330
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211284346|gb|FL173719.1|FL173719
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTCGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|149078907|gb|EE167727.2|EE167727
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211379738|gb|FL173738.1|FL173738
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: AGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGATAATGGGGGAG TGAATGTGCAACCTCTATCCGGEST: gi|211286148|gb|FL173729.1|FL173729
genomic: AGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGA-AATGGGG-AGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211284347|gb|FL173720.1|FL173720
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGEST: gi|211379744|gb|FL173744.1|FL173744
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTG
EST: TCAGAAACGTGCTTTCGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG TGAATGTGCAACCTCTATCCGGGTCGCCCGCCAA
genomic: TCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAGgtaaaatctt ... acctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAA
agatgccttttcaccaaaattttcttaactcatgaccaattttcaacctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGCACTCTTGAAGCCACATGAAAGGATCATGGCTTTGGATCTTCCTCACGG
tcttaac putative branch site (score: 2)
cctttat putative PPT
aaaattttcttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatatttatcttttgtttctgaccatatttctctcataatgttagatgccttttcaccaaaattttcttaactcatgaccaattttcaacctttatagTGAATGTGCAACCTCTATCCGGTTCGCCCGCCAACTTCCATGTATACACTGCACTCTTGAAGCCACATGAAAGGATCATGGCTTTGGATCTTCCTCACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgacc