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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcggaactatgtgtcaacagcaaattcaatgaatgctttgcagtgtgcagtaacatcagtgcttatattggcttgacattgtccagGTTGCACACACTCTTCTTAGCATAATAGATCCTGTTGACAGGCAGCCATTTTCAAGCACACAAAAAAGAGTTTTTGTGTTCACAAAAATGCTCCAAAGTG

Basic information

species Zea mays
transcript GRMZM2G135256_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135256_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os09g09360.1 (Oryza sativa), 3'ss of exon 5
gttcggaactatgtgtcaacagcaaatt-caatgaatgctttgcagtgtgcagtaacatcagtgcttatattggctt-gacattgtccagGTTGCACACACTCTTCTTAGCATAATAGATCCTGTTGACAGGCAGCCATTTTCAAGCACACAAAAAAGAGTTTTTGTGTTCACAAAAATGCTCCAAAGTG
  ||  |||| ||| |  |   ||||||    |   || | |||||| ||    ||||    | ||||| |||  ||  || |||| |||||||||||||| |||||||| ||  |||||||| |  |  | ||||||||||  ||  ||||||||||| ||||||| ||  ||||||||||||||||||
-gtcaaaactgtgtattcatgccaaattattctttgtgttgtgcagtatgtttcaacagtt-tacttatgttgattttaactttgttcagGTTGCACACACACTTCTTAGTATGGTAGATCCTTTGAATGGACAGCCATTTTTGAGTTCACAAAAAAGACTTTTTGTATTTGCAAAAATGCTCCAAAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87151766|gb|DY396555.1|DY396555
EST:     TATCCATGGAACATCAATCTATCCTATGGTGTAATCAATTAGCTGTACAG                         GTTGCACACACTCTTCTTAGCATAATAGATCCTGTTGACAGGCAGC
genomic: TATCCATGGAACATCAATCTATCCTATGGTGTAATCAATTAGCTGTACAGgttcggaact ... cattgtccagGTTGCACACACTCTTCTTAGCATAATAGATCCTGTTGACAGGCAGC
EST: gi|22490449|gb|BU050372.1|BU050372
EST:     TATCCATGGAACATCAATCTATCCTATGGTGTAATCAATTAGCTGTACAG                         GTTGCACACACTCTTCTTAGCATAATAGATCCTGTTGACAGGCAGCC
genomic: TATCCATGGAACATCAATCTATCCTATGGTGTAATCAATTAGCTGTACAGgttcggaact ... cattgtccagGTTGCACACACTCTTCTTAGCATAATAGATCCTGTTGACAGGCAGCC
EST: gi|19058179|gb|BM736846.1|BM736846
EST:     TATCCATGGAACATCAATCTATCCTATGGTGTAATCAATTAGCTGTACAG                         GTTGCACACACTCTTCTTAGCATAATAGATCCT
genomic: TATCCATGGAACATCAATCTATCCTATGGTGTAATCAATTAGCTGTACAGgttcggaact ... cattgtccagGTTGCACACACTCTTCTTAGCATAATAGATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgctttgcagtgtgcagtaacatcagtgcttatattggcttgacattgtccagGTTGCACACACTCTTCTTAGCATAATAGATCCTGTTGACAGGCAGCCATTTTCAAGCACACAAAAAAGAGTTTTTGTGTTCACAAAAATGCTCCAAAGTG
                               ttatatt  TA-rich tract