1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttaaaacttgatagggtcatgatccaaatgatcttatcatgtaaaacaaaattttctcacaattttgacaacctttgtaatagtttattatactttctagGTTGAGCCTGGCAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCTACTGAGTCCAGGAGAAATGAGTGGTTTCAGATTCATGACTATATCAGTAG
species | Zea mays |
transcript | GRMZM2G135256_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTTACATCAAAGATGGTCCAAATTCCTGCAGGACCTGCTCCAAAACCAG GTTGAGCCTGGCAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCTEST: gi|32836534|gb|CD976212.1|CD976212
genomic: AGTTACATCAAAGATGGTCCAAATTCCTGCAGGACCTGCTCCAAAAC-AGgtactatttt ... tactttctagGTTGAGCCTGGCAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCT
EST: AAGTTACATCAAAGATGGTCCAAATTCCTGCAGGACCTGCTCCACACCAG GTTGAGCCTGGCAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCTAEST: gi|78110849|gb|DV529247.1|DV529247
genomic: AAGTTACATCAAAGATGGTCCAAATTCCTGCAGGACCTGCTCCAAAACAGgtactatttt ... tactttctagGTTGAGCCTGGCAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCTA
EST: AAGTTACATCAAAGATGGTCCAAATTCCTGCAGGACCTGCTCCAAAACAG GTTGAGCCTGGCAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCTA
genomic: AAGTTACATCAAAGATGGTCCAAATTCCTGCAGGACCTGCTCCAAAACAGgtactatttt ... tactttctagGTTGAGCCTGGCAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCTA
acaaaattttctcacaattttgacaacctttgtaatagtttattatactttctagGTTGAGCCTGGCAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCTACTGAGTCCAGGAGAAATGAGTGGTTTCAGATTCATGACTATATCAGTAG
tactttct CT-rich tract
tttgtaatagtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaaacttgatagggtcatgatccaaatgatcttatcatgtaaaacaaaattttctcacaattttgacaacctttgtaatagtttattatactttctagGTTGAGCCTGGCAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCTACTGAGTCCAGGAGAAATGAGTGGTTTCAGATTCATGACTATATCAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - -catgatc
- - - - - - - - - - - - - - - - - - - - - -aaacaaa