1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttaattcattttttgtttgtattatatgatttctgtgattgtgtctacatgggaataactgttatgattccttaaatttatattcttgaacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAG
species | Zea mays |
transcript | GRMZM2G134770_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAEST: gi|32943442|gb|CF048261.1|CF048261
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAEST: gi|94474683|gb|EB703641.1|EB703641
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: TGGTTCTGGTTCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAEST: gi|78112738|gb|DV531132.1|DV531132
genomic: TGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAEST: gi|32841271|gb|CD980952.1|CD980952
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAEST: gi|32839908|gb|CD979589.1|CD979589
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAEST: gi|94480167|gb|EB709125.1|EB709125
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAAGG GGC-CGAGAGCTGGCTCCTATTTCTGATGAEST: gi|6021134|gb|AW066062.1|AW066062
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATT-CTGATGA
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAEST: gi|88752563|gb|DY536704.1|DY536704
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: GAATGCCCATGGACAGGTATGGGGTAATACCTGCTGGTTTTGGTCCAATG GGCACGAGAGCTGGCTCATATTTTGATGAAGATTCTCAGAAGAAGTCTGCAEST: gi|32841323|gb|CD981004.1|CD981004
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAEST: gi|32835369|gb|CD975047.1|CD975047
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACCGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCEST: gi|32840727|gb|CD980408.1|CD980408
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCA-CGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGC
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAEST: gi|211157317|gb|FK993529.1|FK993529
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAEST: gi|78026571|gb|DV494958.1|DV494958
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: ATGGGCTAATACTTGCTGGTTTTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAEST: gi|32841497|gb|CD981178.1|CD981178
genomic: ATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
EST: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATG GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCA
genomic: GAATGCCCATGGACAGGTATGGGCTAATACCTGCTGGTTCTGGTCCAATGgtatgtgctc ... aacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCA
tctacatgggaataactgttatgattccttaaatttatattcttgaacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAG
gaataac putative branch site (score: 88)
ttatgattccttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaattcattttttgtttgtattatatgatttctgtgattgtgtctacatgggaataactgttatgattccttaaatttatattcttgaacttgaaagGGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - ttcattt
- - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - ctacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcttg