Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtcacgacgagtttcccacttgaactggcattgtttcttatcatcacaaaaaaataactctgtagtggtgcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACCGTTTCAAGGACAGTTGATGCGAACGTGTCTGAGGCGGAAGGTGTATACA

Basic information

species Zea mays
transcript GRMZM2G134256_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134256_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g70170.1 (Oryza sativa), 3'ss of exon 5
------------------------gtatgttgtcacgacgagtttc---ccacttgaactg-gcattgtttcttatcat-cacaaaaaaataactctg----------tagtggtgcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACCGTTTCAAGGACAGTTGATGCGAACGTGTCTGAGGCGGAAGGTGTATACA
                          || || |||    || | |      |  ||||  | ||      |   ||||| ||||     |||| |  |          ||   |||| |||||||||    || ||||||||||||||| |||  |||||||| ||||||||||| ||||| |||||| | || || ||||| || || || |||||||||||||
gtgagtttccacagcaaatttacttcatcttatcatctagattgttggaatagctgaatagagctcgacattccatcatacacatgggcataatttcgaagcaaatgctaactgtgcgctttcagGTTTCTACCATGCCCGACCAAGCTCTGCTGGCATTCATCGACCACGGCACAGTTTCGAGGACAATCGACGCAAACGTTTCGGATGCTGAAGGTGTATACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933154|gb|EC876793.2|EC876793
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|40335818|gb|CK369888.1|CK369888
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|60357531|gb|DN224504.1|DN224504
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|28985145|gb|BQ539342.2|BQ539342
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|32839773|gb|CD979454.1|CD979454
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|67033538|gb|CO462287.1|CO462287
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|32850249|gb|CD989930.1|CD989930
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|32907897|gb|CF012710.1|CF012710
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|6626605|gb|AW258137.1|AW258137
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|32865466|gb|CF005148.1|CF005148
EST:     ACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: ACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|32850213|gb|CD989894.1|CD989894
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|5928815|gb|AW056107.1|AW056107
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|60349612|gb|DN216585.1|DN216585
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|32850218|gb|CD989899.1|CD989899
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|37383764|gb|CF628914.1|CF628914
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|37387548|gb|CF630971.1|CF630971
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|45847484|gb|CN071427.1|CN071427
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|32943331|gb|CF048150.1|CF048150
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|211029022|gb|FL468592.1|FL468592
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACMCGATGCCCGACCAASCTTTGCAAGCATTCATAGACCMCGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|60354154|gb|DN221127.1|DN221127
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|113674923|gb|DW829472.1|DW829472
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGAC-AAGCTTTGCAAG
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAG
EST: gi|6952395|gb|AW424463.1|AW424463
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|60354832|gb|DN221805.1|DN221805
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|60355444|gb|DN222417.1|DN222417
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|60348147|gb|DN215120.1|DN215120
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|6601774|gb|AW256215.1|AW256215
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|6056509|gb|AW090899.1|AW090899
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|60357634|gb|DN224607.1|DN224607
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|37400547|gb|CF637629.1|CF637629
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|148949494|gb|EC894958.2|EC894958
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|21432436|gb|BQ547926.1|BQ547926
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|211315754|gb|FL422334.1|FL422334
EST:     TCCTGACACTCTTTATGTGGACAGTCTCATCCTTTCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: TCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|60400687|gb|DN233494.1|DN233494
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|211497584|gb|FL092454.1|FL092454
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCAC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCC-GACCAAGCTTTGCAAGCATTCATAGACCACGGCAC
EST: gi|37383227|gb|CF628606.1|CF628606
EST:     CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CAGCTTATCCTGACACTCTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
EST: gi|32840663|gb|CD980344.1|CD980344
EST:     CTTTATGTGGACAGTCTCATCGGACCTGACACG                         GTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC
genomic: CTTTATGTGGACAGTCTCATCGGACCTGACACGgtatgttgtc ... gcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggcattgtttcttatcatcacaaaaaaataactctgtagtggtgcactttcagGTCAACACGATGCCCGACCAAGCTTTGCAAGCATTCATAGACCACGGCACCGTTTCAAGGACAGTTGATGCGAACGTGTCTGAGGCGGAAGGTGTATACA
                           aaataac  putative branch site (score: 2)
                                              cactttc  putative PPT
                  atcacaaaaaaataa  TA-rich tract