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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactacgtcgctatttcatagtcaccataataattggtagtttggtaccatgttgaatcttacactcctcccaacttcaactcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAATTCTAGCGTGGATCTCAGTGCTTCAGATTTGATCAACAGAATATCATTCC

Basic information

species Zea mays
transcript GRMZM2G134045_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134045_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g42420.1 (Oryza sativa), 3'ss of exon 5
--gtaagtactacgtcgctatttcatagtcaccataataattggtagtttggtacca---tgttgaatcttacactcctcccaacttcaactcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAATTCTAGCGTGGATCTCAGTGCTTCAGATTTGATCAACAGAATATCATTCC
      |  | | ||   |||    ||      || |   |||| |  |  | |      | |  | |||||   || |  | |||| | || | || |||| || |||||||| |||||||||||||||||||| |||||| | || | ||| | ||||||||| ||||||||||||||||||||| |  | || ||||
agtctggggccatgttcttatggtgtatcggttattacctttggaatatctgcattgacctatacagtcttatgttctttaccactttaccttgctgtagGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTTCCAACGTGGATCTGAGTGCTTCAGATTTGATCAACCGGCTTTCTTTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87154151|gb|DY398940.1|DY398940
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|50329244|gb|CO524370.1|CO524370
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|78110556|gb|DV528966.1|DV528966
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|26455703|gb|CA827286.1|CA827286
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|86467876|gb|DY234246.1|DY234246
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|87155179|gb|DY399968.1|DY399968
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|22545199|gb|BU097558.1|BU097558
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|89759290|gb|DY688159.1|DY688159
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|78027266|gb|DV495653.1|DV495653
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|78082818|gb|DV511211.1|DV511211
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|17931094|gb|BM268054.1|BM268054
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
EST: gi|211356763|gb|FL443096.1|FL443096
EST:     ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCT                         GGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT
genomic: ATCAGGCCAGTTTCGAAAAGGACACTCAAGTCTCTCTCCAAAAGTTTTCTgtaagtacta ... ctcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtagtttggtaccatgttgaatcttacactcctcccaacttcaactcgttgcagGGTTCCTCTGCCATATCAAGTGCTGATCTATTTGGCCATCCAGCAAACAATTCTAGCGTGGATCTCAGTGCTTCAGATTTGATCAACAGAATATCATTCC
                     atcttac  putative branch site (score: 3)
                    aatctta  TA-rich tract