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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actttgagaattaaactgaggtatttgtttcagaaaaaagaattaaactgaattaaaatcttcttgaatatttattcatggggggtatgttattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCCTGGCAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCA

Basic information

species Zea mays
transcript GRMZM2G133749_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133749_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv00s0181g00120.t01 (Vitis vinifera), 3'ss of exon 6
actttgagaattaaactgaggtatttgtttcagaaaaaagaattaaactgaattaaaatcttcttgaatatttat--tcatggggggt-atgttattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCCTGGCAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCA
      ||  ||  ||||   | | ||      | |    |||||||      |  ||    ||| |  |||| |   |||  |   | |  || | ||  ||  ||||||||||||||||||||  | ||||||| |||||||| ||||| ||||| ||||| ||||| |||||||||  | | || ||   | ||| |   
---actagggttttactgttatgtatgaagtccagatccaaattaaatgatgatccaacaagcttaatcatttttgaccataagtttttaaattttcttgtagAATATTTGCTGGATACAACAAATGTCTAAGAGTATTTGATGTACATCGCCCTGGTAGAGATTTTGAACAGTATTCTACAATTAAAGGAAATAAAGAAGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78120250|gb|DV538634.1|DV538634
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
EST: gi|78110507|gb|DV528917.1|DV528917
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
EST: gi|71437477|gb|DR818527.1|DR818527
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
EST: gi|71449230|gb|DR830280.1|DR830280
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
EST: gi|31558468|gb|CD527680.1|CD527680
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTATAAGA
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTATAAGA
EST: gi|76287082|gb|DV026650.1|DV026650
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
EST: gi|60394554|gb|DN227424.1|DN227424
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
EST: gi|211132517|gb|FL346748.1|FL346748
EST:     GAAATACCTGCTGCACCTTTCGATTTCTTTCATTTTCT-CAGGGATCTAA                         GCTATTTGCTGGGATACA-CAAAGCT
genomic: GAAATAACTGCTGCAC-TTTCGATTTCTTTCAATT-CTTCAGG-ATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGG-ATACAACAAAGCT
EST: gi|37418378|gb|CF646857.1|CF646857
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
EST: gi|78084101|gb|DV512494.1|DV512494
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
EST: gi|94478312|gb|EB707270.1|EB707270
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCATTTCTTCCGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTA
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTA
EST: gi|78112774|gb|DV531168.1|DV531168
EST:     GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA                         GCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC
genomic: GATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAAgtatgtgtgg ... tattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgaattaaaatcttcttgaatatttattcatggggggtatgttattttacagGCTATTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCCTGGCAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCA
                                            ttatttt  CT-rich tract
     aattaaaatcttcttg  TA-rich tract