1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcgctatgccatgtcacgtgaacacgtcgtcgtggtcccaaaaaggaactagaagagcagcagatgtgattgtggtttttgtgctgtgtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAG
species | Zea mays |
transcript | GRMZM2G133331_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|101391801|gb|EB817829.1|EB817829
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|71448696|gb|DR829746.1|DR829746
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|76931345|gb|DV172707.1|DV172707
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|74237892|gb|DT645806.1|DT645806
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|93017001|gb|EB642521.1|EB642521
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|71311268|gb|DR791947.1|DR791947
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|71773720|gb|DR971616.1|DR971616
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|76923172|gb|DV169368.1|DV169368
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|71330993|gb|DR802318.1|DR802318
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|50329600|gb|CO524726.1|CO524726
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|91868422|gb|EB400029.1|EB400029
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGEST: gi|91871984|gb|EB401941.1|EB401941
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
EST: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAG GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
genomic: GACATGACAACTCATTGCCGGCGTGCAAGGTGGAGCCCAGGGATCACAAGgtgcgctatg ... gtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATG
aaggaactagaagagcagcagatgtgattgtggtttttgtgctgtgtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAG
tttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgctatgccatgtcacgtgaacacgtcgtcgtggtcccaaaaaggaactagaagagcagcagatgtgattgtggtttttgtgctgtgtcatggcagGCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAG
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