1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gacatttttctttctttgtacgaaagacaaatcaagttgttttgtttttcttttaagttaatccaactattcagcaaaacatcttcatttcatttgtcagGTGGGGACCAAATTTGGGGAGAACACATCGAGATGGGGTTCCATGCTCTCTGATGGACAGGTTGGTAAGCTAAGTGACATCCTTCCTGGACCAGCAGCTG
species | Zea mays |
transcript | GRMZM2G132991_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTGTTACTCAG GTGGGGACCAAATTTGGGGAGAACACATCGAGATGGGGTTCCATGCTCTCT
genomic: ATTTGTTACTCAGgtaactgact ... catttgtcagGTGGGGACCAAATTTGGGGAGAACACATCGAGATGGGGTTCCATGCTCTCT
ttttcttttaagttaatccaactattcagcaaaacatcttcatttcatttgtcagGTGGGGACCAAATTTGGGGAGAACACATCGAGATGGGGTTCCATGCTCTCTGATGGACAGGTTGGTAAGCTAAGTGACATCCTTCCTGGACCAGCAGCTG
agttaat putative branch site (score: 2)
tcttcatttcattt putative PPT
ttttaagttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacatttttctttctttgtacgaaagacaaatcaagttgttttgtttttcttttaagttaatccaactattcagcaaaacatcttcatttcatttgtcagGTGGGGACCAAATTTGGGGAGAACACATCGAGATGGGGTTCCATGCTCTCTGATGGACAGGTTGGTAAGCTAAGTGACATCCTTCCTGGACCAGCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - agacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcattt