Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacacaagcatccagatgtgttgattctggagaaattgctgttagtagatgcaaaatccggtcgatgtgtgtgtgactcgaaactttatttttggaacatggtctcagGAAGTCCGTAGACGGGGCCTCAAATGCGCTGTGGTCGGCGTCCCAAAGACCATCGATAATGACATCGCG

Basic information

species Zea mays
transcript GRMZM2G132069_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132069_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 3'ss of exon 5
gtataacacaagcatccagatgtgttgattctggag-aaattgctgttagtag-atgcaaaatccggtcgatgtgtgtgtgactcgaaactttatttttggaacatggtctcagGAAGTCCGTAGACGGGGCCTCAAATGCGCTGTGGTCGGCGTCCCAAAGACCATCGATAATGACATCGCG
           | | |   |   | ||||  ||  | ||||   |||| || | ||||  ||| |  ||        | | || | ||       || | ||| ||| | ||||||||| || || || |||||||||||  ||||||| || |||||||||||||| ||||| ||||| |||
-----------gtaactc-acaggctgataatgatgtaaataaatgtttgtgggatgcccaatgctatc--------tataacacaaa------cttgttgaaaatgatttcagGAAGTTCGGAGGCGAGGCCTCAAATGTTCTGTGGTTGGTGTCCCAAAGACCATAGATAACGACATTGCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatccggtcgatgtgtgtgtgactcgaaactttatttttggaacatggtctcagGAAGTCCGTAGACGGGGCCTCAAATGCGCTGTGGTCGGCGTCCCAAAGACCATCGATAATGACATCGCG
                           aaactttattttt  TA-rich tract