1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtttggtgtacaatgctattgttgacagttttttaattctgtttttaggttcttttaatgtatataacaatttgggtttactggttgggatctgtcataggagtttcagagcttagtctatggttgacaattggttgtgactcttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTTATATCAGGAGGAGGTGATTCAACT
species | Zea mays |
transcript | GRMZM2G131998_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGANAACCAGAGTTTTCTEST: gi|13149651|gb|BG319973.1|BG319973
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: TGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTEST: gi|87156923|gb|DY401712.1|DY401712
genomic: TGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTEST: gi|89761079|gb|DY689237.1|DY689237
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTEST: gi|89249366|gb|DY621152.1|DY621152
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAACTTTTGCCTTGGGCATACAGA CTTTGTATCATGCTTCACEST: gi|71437750|gb|DR818800.1|DR818800
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCAC
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTEST: gi|148945698|gb|EC890971.2|EC890971
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTEST: gi|148973467|gb|EE024565.2|EE024565
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTEST: gi|78106892|gb|DV525310.1|DV525310
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGANAACCAGAGTTTTCTEST: gi|78081795|gb|DV510207.1|DV510207
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGNAAACCAGAGTTTTCTEST: gi|149111910|gb|EE191066.2|EE191066
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTEST: gi|89759711|gb|DY688443.1|DY688443
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTEST: gi|76017216|gb|DT944386.1|DT944386
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTEST: gi|50331437|gb|CO526563.1|CO526563
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCT
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAEST: gi|71771570|gb|DR969507.1|DR969507
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAA
EST: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGA CTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTTC
genomic: CCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttgg ... cttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTT-C
taggagtttcagagcttagtctatggttgacaattggttgtgactcttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTTATATCAGGAGGAGGTGATTCAACT
ggttgac putative branch site (score: 140)
ctcttcttgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttggtgtacaatgctattgttgacagttttttaattctgtttttaggttcttttaatgtatataacaatttgggtttactggttgggatctgtcataggagtttcagagcttagtctatggttgacaattggttgtgactcttcttgcagCTTTGTATCATGCATCACCTTCACTAGCATATCTGAAAACCAGAGTTTTCTTATATCAGGAGGAGGTGATTCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG