1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgggactattatcagactattgtcacttgtcagcctggcttcagaatgttaagtagccattgcaatttcaatttattcaattcaacatggataacaattccatttatgttttttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAACTACACCATCTAATTACTACTACATTTGTGAAAAGAATGGTGGCTCGTTG
species | Zea mays |
transcript | GRMZM2G130889_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAACEST: gi|60349712|gb|DN216685.1|DN216685
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAACEST: gi|22543150|gb|BU093588.1|BU093588
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: CTCAAGGNCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG ACAAATGTGGGAGACATCCATGGAEST: gi|32849483|gb|CD989164.1|CD989164
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGA
EST: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAACEST: gi|22935539|gb|BU571814.1|BU571814
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAACEST: gi|60342116|gb|DN209089.1|DN209089
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAACEST: gi|32801870|gb|CD954106.1|CD954106
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: GATCCGGGGGAATAAAACTGAGCATGTAAAACACTACAG ACAAATGTGGGAGACATCAATGGAAGGTCTATTAEST: gi|32801642|gb|CD953878.1|CD953878
genomic: GATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTA
EST: GATCCCGGGGAATAAAACTGAGCATGTAAAACACTACAG ACAAATGTGGGAGACATCAATGGAAGGTCTATTAEST: gi|32941898|gb|CF046717.1|CF046717
genomic: GATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTA
EST: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAACEST: gi|32801477|gb|CD953713.1|CD953713
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: GATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG ACAAATGTGGGAGACATCAATGGAAGGTCTATTA
genomic: GATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTA
tcaatttattcaattcaacatggataacaattccatttatgttttttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAACTACACCATCTAATTACTACTACATTTGTGAAAAGAATGGTGGCTCGTTG
ggataac putative branch site (score: 3)
tgttttttcgtttc putative PPT
atttatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgggactattatcagactattgtcacttgtcagcctggcttcagaatgttaagtagccattgcaatttcaatttattcaattcaacatggataacaattccatttatgttttttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAACTACACCATCTAATTACTACTACATTTGTGAAAAGAATGGTGGCTCGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG