1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aggaaccgcctccgttgatgaaacatcgtgcggacggtttttttacgccgacgtgggcgaacgacgtcactcgtttgcgtcgcggtttgtatagtagtaaTTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCCATGGGAGGTTGACTGTCCGAATGCTACGCTTTTATTAAAGCTGCCAGAAGCAC
species | Zea mays |
transcript | GRMZM2G130548_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTA TTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCCATGGEST: gi|12971278|gb|BG267403.1|BG267403
genomic: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTActagtaacgg ... atagtagtaaTTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCCATGG
EST: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTA TTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCCATGGEST: gi|30052458|gb|AI065747.2|AI065747
genomic: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTActagtaacgg ... atagtagtaaTTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCCATGG
EST: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTA TTTCTTTCGTCTCCTTGTCNTGATATAGGGTGTAAACCATGTGGCACTGCCEST: gi|213179400|gb|FM185674.1|FM185674
genomic: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTActagtaacgg ... atagtagtaaTTTCTT-CGTCTC-TTGTC-TGATATAGG-TGTAAACCATGTGGCACTGCC
EST: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTA TTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCCEST: gi|78027480|gb|DV495867.1|DV495867
genomic: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTActagtaacgg ... atagtagtaaTTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCC
EST: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTA TTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCCATGGEST: gi|111145857|gb|EE258097.1|EE258097
genomic: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTActagtaacgg ... atagtagtaaTTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCCATGG
EST: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTA TTTCTTCGTCTCTTGTCTGATATAGGGTGGGAAACCATGGGGCACTGCCCA
genomic: TCTAGTTATGTGCCTCACTAGTTTCTTGAAGGTAGTTGTTGAACTAGGTActagtaacgg ... atagtagtaaTTTCTTCGTCTCTTGTCTGATATAGG-TGT-AAACCATGTGGCACTGCC-A
cgccgacgtgggcgaacgacgtcactcgtttgcgtcgcggtttgtatagtagtaaTTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCCATGGGAGGTTGACTGTCCGAATGCTACGCTTTTATTAAAGCTGCCAGAAGCAC
tttgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggaaccgcctccgttgatgaaacatcgtgcggacggtttttttacgccgacgtgggcgaacgacgtcactcgtttgcgtcgcggtttgtatagtagtaaTTTCTTCGTCTCTTGTCTGATATAGGTGTAAACCATGTGGCACTGCCATGGGAGGTTGACTGTCCGAATGCTACGCTTTTATTAAAGCTGCCAGAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - -tgatgaa
- - - - - - - - - - - - - - tgcggac