1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcccgactaatcgcgattaatcgcgattagtcggacgacttgaaatcattgattgtaatcatagattctagtcttgactggactcctgcagaccttgcagATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAG
species | Zea mays |
transcript | GRMZM2G130332_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG ACCTTGCAGATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGEST: gi|71324621|gb|DR799009.1|DR799009
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagA--T--C-GA-CGA---TTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG ACCTTGCAGATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGEST: gi|71769300|gb|DR967237.1|DR967237
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagA--T--C-GA-CGA---TTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG ACCTTGCAGATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGEST: gi|78088914|gb|DV517307.1|DV517307
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagA--T--C-GA-CGA---TTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG ACCTTGCAGATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGEST: gi|211026296|gb|FL344450.1|FL344450
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagA--T--C-GA-CGA---TTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGACCTTGCAGEST: gi|24773782|gb|CA409036.1|CA409036
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTT--A-A------AGgtaatcagct ... ga
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGACCTTGCAGEST: gi|71329026|gb|DR801212.1|DR801212
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTT--A-A------AGgtaatcagct ... ga
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG ACCTTGCAGATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGEST: gi|76014966|gb|DT942136.1|DT942136
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagA--T--C-GA-CGA---TTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG ATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGCATCATGAAEST: gi|148961806|gb|EE012586.2|EE012586
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGCATCATGAA
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG AACTTGCAGATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGEST: gi|71443835|gb|DR824885.1|DR824885
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagA--T--C-GA-CGA---TTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG ACCTTGCAGATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGEST: gi|148970899|gb|EE021693.2|EE021693
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagA--T--C-GA-CGA---TTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG ACCTTGCAGATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGEST: gi|74233526|gb|DT641440.1|DT641440
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagA--T--C-GA-CGA---TTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG ACCTTGCAGATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGEST: gi|76017579|gb|DT944749.1|DT944749
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagA--T--C-GA-CGA---TTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
EST: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAG ACCTTGCAGATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
genomic: TTAGCATGGGCAACCCCCACTGTGTCACATTTGGGGCAAACGAGTTAAAGgtaatcagct ... gaccttgcagA--T--C-GA-CGA---TTTAAAACTCAGCGAAATTGGGCCTAAATTTGAG
tcattgattgtaatcatagattctagtcttgactggactcctgcagaccttgcagATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAG
tcttgac putative branch site (score: 18)
attgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccgactaatcgcgattaatcgcgattagtcggacgacttgaaatcattgattgtaatcatagattctagtcttgactggactcctgcagaccttgcagATCGACGATTTAAAACTCAGCGAAATTGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAG
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