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...ggcactgagtctcttcttttttatatagatttgaacattttgaacaacattagtactgtcaagtttggggttcacattagtcttgtgtttgtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGGACTTGGATTCCGCTGAAGAATTAAGTGCCCAACTTGGGGAGCTATTCGA
species | Zea mays |
transcript | GRMZM2G130230_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCAT CTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGGEST: gi|71449499|gb|DR830549.1|DR830549
genomic: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCATgtaaaagttt ... gtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGG
EST: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCAT CTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGGEST: gi|71447340|gb|DR828390.1|DR828390
genomic: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCATgtaaaagttt ... gtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGG
EST: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCAT CTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGGEST: gi|89759526|gb|DY688327.1|DY688327
genomic: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCATgtaaaagttt ... gtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGG
EST: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCAT CTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGGEST: gi|78083439|gb|DV511832.1|DV511832
genomic: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCATgtaaaagttt ... gtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGG
EST: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCAT CTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGGEST: gi|71436592|gb|DR817642.1|DR817642
genomic: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCATgtaaaagttt ... gtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGG
EST: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCAT CTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGGEST: gi|93283386|gb|EB675650.1|EB675650
genomic: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCATgtaaaagttt ... gtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGG
EST: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCAT CTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGGEST: gi|78109778|gb|DV528194.1|DV528194
genomic: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCATgtaaaagttt ... gtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGG
EST: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCAT CTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGGEST: gi|71449885|gb|DR830935.1|DR830935
genomic: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCATgtaaaagttt ... gtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGG
EST: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCAT CTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGG
genomic: TGTCTACCCTTCAGTGTGCAAAATGATCAGAACATATTGCATGAATCCATgtaaaagttt ... gtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcactgagtctcttcttttttatatagatttgaacattttgaacaacattagtactgtcaagtttggggttcacattagtcttgtgtttgtgcgtgcagCTTCTCACCCTGGATGGACCAGAGTCATTGTTGAGAAGCCCTTTGGAAAGGACTTGGATTCCGCTGAAGAATTAAGTGCCCAACTTGGGGAGCTATTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
-gcactga
- - - - - - - - - - - - - - - - - - - - - aacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt