1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttccttttatgtttgatcaaaaatgtaaactgaaagttgtgaagtggtccaacaggcttgttttaattttctacaatgacattcttcccatctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTCAAGGATATAATCGATGGGGCGATTGCTGAAG
species | Zea mays |
transcript | GRMZM2G129987_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|211238012|gb|FL479475.1|FL479475
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: CTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|31664549|gb|CD573482.1|CD573482
genomic: CTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|19436724|gb|BM953134.1|BM953134
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|149009177|gb|EE041301.2|EE041301
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|91053239|gb|EB163657.1|EB163657
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|76011893|gb|DT939063.1|DT939063
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|71771230|gb|DR969167.1|DR969167
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|78082398|gb|DV510810.1|DV510810
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|19057616|gb|BM736283.1|BM736283
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|19436292|gb|BM952702.1|BM952702
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|71320398|gb|DR796949.1|DR796949
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|71771229|gb|DR969166.1|DR969166
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|78026730|gb|DV495117.1|DV495117
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: GGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|67022325|gb|CO451074.1|CO451074
genomic: GGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: ATAAGGGTAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|19436725|gb|BM953135.1|BM953135
genomic: ATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTGGATTCCCACCGCTTEST: gi|91054843|gb|EB165261.1|EB165261
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|76924244|gb|DV169873.1|DV169873
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|33098018|gb|CF057978.1|CF057978
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTEST: gi|60341606|gb|DN208579.1|DN208579
genomic: AAAACGGACTTGAAGGAACTCTACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
EST: ACACAAAATATAAGGGCAACATGAACAG GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
genomic: ACACAAAATATAAGGGCAACATGAACAGgtgatttctg ... atctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTT
tggtccaacaggcttgttttaattttctacaatgacattcttcccatctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTCAAGGATATAATCGATGGGGCGATTGCTGAAG
ttttaat putative branch site (score: 25)
ttcttcccatctatcc putative PPT
ttttaattttctacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttccttttatgtttgatcaaaaatgtaaactgaaagttgtgaagtggtccaacaggcttgttttaattttctacaatgacattcttcccatctatccagGCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTCAAGGATATAATCGATGGGGCGATTGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - -atgtttg
- - - - - - - - atcaaaa
- - - - - - - - - - - - - - aactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttt