1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gcatataccacaaaaaacaagtataaatttgttcacggtgtgcaaaaaacaacagagtaactgtattcttgttttgatctgaaattttgaattgtgtcagGGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAA
species | Zea mays |
transcript | GRMZM2G129513_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAG GGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTTEST: gi|33104389|gb|CF064349.1|CF064349
genomic: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAGgtttcttttg ... attgtgtcagGGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTC
EST: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAG GGGAAAGCACTTAEST: gi|211398041|gb|FL283723.1|FL283723
genomic: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAGgtttcttttg ... attgtgtcagGGGAAAGCACTTA
EST: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAG GGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTTEST: gi|211398042|gb|FL283724.1|FL283724
genomic: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAGgtttcttttg ... attgtgtcagGGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTC
EST: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAG GGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTTEST: gi|211395432|gb|FL283722.1|FL283722
genomic: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAGgtttcttttg ... attgtgtcagGGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTC
EST: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAG GGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTTEST: gi|13558383|gb|BG549739.1|BG549739
genomic: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAGgtttcttttg ... attgtgtcagGGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTC
EST: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGTTGACCAG GGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTCEST: gi|30705491|gb|CD058800.1|CD058800
genomic: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAGgtttcttttg ... attgtgtcagGGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTC
EST: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAG GGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTC
genomic: TGGAGCGAGCTGCGCTACTGGATATCAATGGCCAAATCTTTGCTGACCAGgtttcttttg ... attgtgtcagGGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTC
aaaacaacagagtaactgtattcttgttttgatctgaaattttgaattgtgtcagGGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAA
tgaaattttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatataccacaaaaaacaagtataaatttgttcacggtgtgcaaaaaacaacagagtaactgtattcttgttttgatctgaaattttgaattgtgtcagGGGAAAGCACTTAATGCGGTCGCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAA
- - - - - caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -caacaga