1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgctatgactttctcatgtataatgcattgccattatgaactatacatcttattgatttctataccctgtagGCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCCAGAGGCCCGTCTCCACTGGTTCACCAGTGGTTCGACTTCTGCCTGCAGA
species | Zea mays |
transcript | GRMZM2G129071_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGG GCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCCEST: gi|211175272|gb|FL438827.1|FL438827
genomic: TCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGGgtatgctatg ... taccctgtagGCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCC
EST: TCGTGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGG GCAATACCATGCGCGACGAGATTTCAGACTGAACAAATCGGGAGCCGAGCCEST: gi|211232805|gb|FL096282.1|FL096282
genomic: TCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGGgtatgctatg ... taccctgtagGCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCC
EST: TCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGG GCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCCEST: gi|4776059|gb|AI665062.1|AI665062
genomic: TCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGGgtatgctatg ... taccctgtagGCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCC
EST: TCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGG GCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCCEST: gi|12970010|gb|BG266769.1|BG266769
genomic: TCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGGgtatgctatg ... taccctgtagGCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCC
EST: TCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGG GCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCCEST: gi|5343133|gb|AI795543.1|AI795543
genomic: TCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGGgtatgctatg ... taccctgtagGCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCC
EST: TCGCGGTGGTTGATCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGG GCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCC
genomic: TCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGGgtatgctatg ... taccctgtagGCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCC
gtataatgcattgccattatgaactatacatcttattgatttctataccctgtagGCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCCAGAGGCCCGTCTCCACTGGTTCACCAGTGGTTCGACTTCTGCCTGCAGA
tattgat putative branch site (score: 20)
tttctat CT-rich tract
ttattgatttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctatgactttctcatgtataatgcattgccattatgaactatacatcttattgatttctataccctgtagGCAATACCATGCGCGACGAGATTTCAGACTGACCAAATCGGGAGCCGAGCCAGAGGCCCGTCTCCACTGGTTCACCAGTGGTTCGACTTCTGCCTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG