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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgcattataaggtttacctttattacagtatttgtttatcttctcatattagtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttcattatgatccctatagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcagGGTTGTTGGAGGTTTGCTTAGTGCATATGATCTATCTGGTGATAAAGTATTTCTTGATAAGGCTAAAGATATTACAGATCGTCTATTACCTGCTTGGGAT

Basic information

species Zea mays
transcript GRMZM2G128914_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128914_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 3'ss of exon 5
gttgcattataaggtttacctttattacagtatttgtttatcttctcatattagtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttcattatgatccctatagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcagGGTTGTTGGAGGTTTGCTTAGTGCATATGATCTATCTGGTGATAAAGTATTTCTTGATAAGGCTAAAGATATTACAGATCGTCTATTACCTGCTTGGGAT
||||| |||||||||||||  || ||  ||||||| ||| ||||   ||||| |  | |   |    |||| |  |  |  | | |          || ||  |||  |     ||| ||  ||| |||  | |   || ||||| ||| | || | | ||| ||||||| |||||||||||  | || ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || |||||| ||||||||||||||
gttgccttataaggtttactattgttgtagtattttttt-tcttaaaatatttgact-tctttgatcgatgctatgtaggcagacc----------acattttttagaac----ataaaagtatatcta--gtt---ttttctaagtttctgttttatttttatattcagAGTTGTTGGAGGCCTCCTCAGTGCATATGATCTATCTGGTGACAAAGTATTTCTTGAGAAGGCCAAAGATATTACTGACCGTCTACTACCTGCTTGGGAT

upper sequence: GRMZM2G128914_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA17G06600.1 (Glycine max), 3'ss of exon 5
gttgcattataaggtttacctttattacagtatttgtttatcttctcatattagtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttcattatgatccctatagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcagGGTTGTTGGAGGTTTGCTTAGTGCATATGATCTATCTGGTGATAAAGTATTTCTTGATAAGGCTAAAGATATTACAGATCGTCTATTACCTGCTTGGGAT
|||| |||| |||||| |   ||| |    | ||    ||  |||||     |       ||||  || ||||        ||      | | |||| |   ||| || |  |||                 | |  |||||| ||||    |   || |||   || || ||| | || ||  | || ||||| |||||||| |||||||| ||||| || ||||| |||||||||||| || |||||    |||||||||||||| ||
gttgaattagaaggttcaatcttagttt--tgttgacataatttctc-cgcca-------ccttaaagttgtt------gtaactttgctagttgcaacaa-attttgctttcta---------------gtccattttgtctcattt---gtctattattttggtttagAGTTCTAGGTGGCCTTCTCAGTGCTTATGATCTCTCTGGTGACAAAGTTTTCCTTGAGAAGGCTAAAGATCTTGCAGATAAGTTATTACCTGCTTGGAAT

upper sequence: GRMZM2G128914_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv11s0052g00140.t01 (Vitis vinifera), 3'ss of exon 5
gttgcattataaggtttacctttattacagtatttgtttatcttctcatattagtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttcattatgatccctatagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcagGGTTGTTGGAGGTTTGCTTAGTGCATATGATCTATCTGGTGATAAAGTATTTCTTGATAAGGCTAAAGATATTACAGATCGTCTATTACCTGCTTGGGAT
|||||||||||||||||    ||||        || ||||| |  | |||  ||||| ||  ||     |    | | ||      |  |||          |  | ||  | |||    | ||  | || |||   |   ||  |||| | | |||   ||| || ||| ||| | || ||  | ||||||||||||||||| || ||||| ||||| || ||||| |||||| |||||||| ||||| |  |  | ||||||||| ||
gttgcattataaggtttcatcttat--------ttatttatttaataata--agtttctttttttttctttggggacagaggtcctctctgggatggttgagaggaagaagcgtatg---acatgtccactgctttttatcct--ttttgtatacttatgttgaatgcagAGTTTTAGGTGGACTTCTTAGTGCATATGATCTTTCCGGTGACAAAGTCTTCCTTGAAAAGGCTCAAGATATTGCAGATAGATTGCTGCCTGCTTGGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcagGGTTGTTGGAGGTTTGCTTAGTGCATATGATCTATCTGGTGATAAAGTATTTCTTGATAAGGCTAAAGATATTACAGATCGTCTATTACCTGCTTGGGAT
                              ttttattttctttgtt  CT-rich tract
                         tctaattttattttct  TA-rich tract