1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagattcaaatgtcgagcacgccatttgtctccaacgagacaacgatgtagatgcttagactctttgatgtgccatgttgtgcacatttgaaccttatcaattcttcctcatatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCAGCAAAGCAGGAGGACATGGTGGATGTCAACCTGAAGTCGACTTCTAGCC
species | Zea mays |
transcript | GRMZM2G128771_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAG CCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCAEST: gi|37387848|gb|CF631126.1|CF631126
genomic: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAGgtcagattca ... atatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCA
EST: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAG CCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCAEST: gi|211492535|gb|FL462462.1|FL462462
genomic: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAGgtcagattca ... atatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCA
EST: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAG CCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCAEST: gi|211435904|gb|FL357606.1|FL357606
genomic: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAGgtcagattca ... atatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCA
EST: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAG CCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCAEST: gi|37379915|gb|CF626729.1|CF626729
genomic: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAGgtcagattca ... atatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCA
EST: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAG CCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCAEST: gi|40335969|gb|CK370039.1|CK370039
genomic: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAGgtcagattca ... atatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCA
EST: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAG CCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCAEST: gi|211481374|gb|FL368109.1|FL368109
genomic: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAGgtcagattca ... atatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCA
EST: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCTAG CCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCAEST: gi|211492534|gb|FL462461.1|FL462461
genomic: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAGgtcagattca ... atatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCA
EST: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAG CCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCA
genomic: TGAATGTCATGTTCATCGAGACCAGCGCGAAAGCCGGCTTCAACATCAAGgtcagattca ... atatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCA
tgatgtgccatgttgtgcacatttgaaccttatcaattcttcctcatatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCAGCAAAGCAGGAGGACATGGTGGATGTCAACCTGAAGTCGACTTCTAGCC
ctttgat putative branch site (score: 100)
ttcttcctcat putative PPT
ttatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagattcaaatgtcgagcacgccatttgtctccaacgagacaacgatgtagatgcttagactctttgatgtgccatgttgtgcacatttgaaccttatcaattcttcctcatatgtgtagCCGTTGTTCCGCAAGATCGCTGCAGCCCTGCCAGGAATGGAGACATTGTCAGCAAAGCAGGAGGACATGGTGGATGTCAACCTGAAGTCGACTTCTAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG