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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaccgtcatatttttatagaatctatagttgacagtcgatgtgtcctgtatttcaattattgcccaaattcttgatttgtagtgttatcctttttggcagAAAAATCGCTGCGTCGCCAGACAAGCAGCACGGATTTAAGGACAAG

Basic information

species Zea mays
transcript GRMZM2G128748_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74242220|gb|DT650134.1|DT650134
EST:     TGATCTCATTGGATCCTTTATGGCATATCCTAAGAAGGATGGGCCTATAG                         AAAAATCGCTGCGTCGCCAGACAAGCAGCACGGATTTAAGGACAAG
genomic: TGATCTCATTGGATCCTTTATGGCATATCCTAAGAAGGATGGGCCTATAGgtagttaagg ... tttttggcagAAAAATCGCTGCGTCGCCAGACAAGCAGCACGGATTTAAGGACAAG
EST: gi|74239320|gb|DT647234.1|DT647234
EST:     TGATCTCATTGGATCCTTTATGGCATATCCTAAGAAGGATGGGCCTATAG                         AAAAATCGCTGCGTCGCCAGACAAGCAGCACGGATTTAAGGACAAG
genomic: TGATCTCATTGGATCCTTTATGGCATATCCTAAGAAGGATGGGCCTATAGgtagttaagg ... tttttggcagAAAAATCGCTGCGTCGCCAGACAAGCAGCACGGATTTAAGGACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtatttcaattattgcccaaattcttgatttgtagtgttatcctttttggcagAAAAATCGCTGCGTCGCCAGACAAGCAGCACGGATTTAAGGACAAG
                        tcttgat  putative branch site (score: 4)
                                       ttatccttttt  putative PPT
     tttcaattatt  TA-rich tract