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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaaggataagtccttgctacaccaggagcctagtcccaggaaggaaatctcccagccaaacacataatttgaaggtagtaattcacttttctttgacagGTTTCCATGATGGAACGTGATTTTTATCTAGGACGGATACTCACTGGGAGAGTAAGGTCCGGAGTTGTCCGTGTTGGTGACAAAGTCCATGGTCTTCGCA

Basic information

species Zea mays
transcript GRMZM2G128688_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128688_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 3'ss of exon 5
---agaaggataagtccttgctacaccaggagcctagtcccaggaaggaaatctcccagccaaacacataatttgaaggtagtaattcacttttctttgacagGTTTCCATGATGGAACGTGATTTTTATCTAGGACGGATACTCACTGGGAGAGTAAGGTCCGGAGTTGTCCGTGTTGGTGACAAAGTCCATGGTCTTCGCA
      || ||   || |   |  |||      ||      |   | | ||  |   |     |    | |   | ||  ||||||||| |  ||||  ||||||||||||||||||||| ||||||||||||||||| ||||| |||||  ||||||| || || ||||||||||||||||||||||| ||||||||||| |
caccctagaatttatcttaaatttacctct--tctgaagatatttatgtaaggttgtactggtaattcttaagcggagccagtaattca-tagtcttctacagGTTTCCATGATGGAACGCGATTTTTATCTAGGACGAATACTGACTGGACGAGTAAGATCTGGGGTTGTCCGTGTTGGTGACAAAGTGCATGGTCTTCGTA

upper sequence: GRMZM2G128688_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT2G31060.3 (Arabidopsis thaliana), 3'ss of exon 5
--agaaggataagtccttgctacaccaggagcctagtcccaggaaggaaatctcccagccaaacacataatttgaaggtagtaattcacttttct--ttgacagGTTTCCATGATGGAACGTGATTTTTATCTAGGACGGATACTCACTGGGAGAGTAAGGTCCGGAGTTGTCCGTGTTGGTGACAAAGTCCATGGTCTTCGCA
    |   ||| ||   |  ||    | | |  ||     | |   ||| |     ||||  |   || || |  |  || |  ||| || ||||  ||  |||||||| ||||||||    || || ||||| ||||| ||| | ||||| |||||||  || |||||||||||||||||||||| |||| |||| || ||||
attcatttatacgtaactattattttaagggtataa---aatgtctgaactgctaaagccctagcaatgatatttaacta-tcgttctctcttctgatttccagGTTTCAATGATGGAGAAGGACTTCTATCTCGGACGAATATTAACTGGAAGAGTAACTTCTGGAGTTGTCCGTGTTGGTGACAGAGTCAATGGACTACGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatctcccagccaaacacataatttgaaggtagtaattcacttttctttgacagGTTTCCATGATGGAACGTGATTTTTATCTAGGACGGATACTCACTGGGAGAGTAAGGTCCGGAGTTGTCCGTGTTGGTGACAAAGTCCATGGTCTTCGCA
                                     ttcacttttcttt  CT-rich tract
                   ataatttgaa  TA-rich tract