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...ttcttttttatctttattttgagtatttatcaccatgtgccatgtgaagatttatacatcgtgtagctcaatgtttctctctttttttttcgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGAAAG
species | Zea mays |
transcript | GRMZM2G128114_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATATAATTCCTCCAACTTTATCTGATCGCAGATTGTTGGTTCTGAAGCAG CCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGEST: gi|211450282|gb|FK953943.1|FK953943
genomic: ATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGGTTCTGAAGCAGgcaatatgct ... cgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATG
EST: ATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGGTTCTGAAGCAG CCTGTTGGGGTAGEST: gi|211509962|gb|FL438235.1|FL438235
genomic: ATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGGTTCTGAAGCAGgcaatatgct ... cgcactgcagCCTGTTGGGGTAG
EST: ATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGGTTCTGAAGCAG CCTGTTGGGGTAGTTGTAGCTATTACACCATGGAATTTTCCATTAGCCAATEST: gi|67040351|gb|CO466606.1|CO466606
genomic: ATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGGTTCTGAAGCAGgcaatatgct ... cgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGC-AAT
EST: ATATAATTCCTCCAACTTTATCTGATCGCAGATTGTTGGTTCTGAAGCAG CCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATG
genomic: ATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGGTTCTGAAGCAGgcaatatgct ... cgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATG
gaagatttatacatcgtgtagctcaatgtttctctctttttttttcgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGAAAG
ctcaatgtttctctct CT-rich tract
tcttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttttttatctttattttgagtatttatcaccatgtgccatgtgaagatttatacatcgtgtagctcaatgtttctctctttttttttcgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGATAACCCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA