Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgatttatatcatccactgatgttagttgatggttgtgattttgaggttcttttggggcctgattggtttgtacttctctgttcagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGCATATATGGTGATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGG

Basic information

species Zea mays
transcript GRMZM2G128114_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128114_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g07760.2 (Oryza sativa), 3'ss of exon 4
gtacttgatttatatcatccactgat----gttagttgatggttgtgattttgaggttcttttggggcctgattggtttgtacttctctgttcagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGCATATATGGTGATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGG
||||||   | | ||  | | |||||    ||||||||     ||||||| | | |   |  ||| | || |||||||  ||  |   | |||||||||  |||||||||||||| || ||||| ||||| || ||||||||||| |||||||||||||| ||||| |||||| |||||||||||||||| ||||
gtacttt-ctaaaatactgcgctgatattcgttagttggaatatgtgattctaaagccttactggagactcattggttgcta--taaatattcagGTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGTATATATGGTGATATTATTCCCCCAACTCTATCTGATCGTAGATTATTGG

upper sequence: GRMZM2G128114_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA15G41690.1 (Glycine max), 3'ss of exon 5
----------gtacttgatttatatcatccactgatgttagttgatggttgtgattttgaggttctt-ttggggcctgattggtttgtacttctctgtt-cagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGCATATATGGTGATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGG
          |     || ||||    ||   |  |  |  |  ||| |    | ||  |  |  || |||| ||   ||   | |  |   || | || ||| | || ||||| ||  | || || || | |   || ||||| ||||| || |||||||| |||||||||||| || || ||||||||||  |||| || |
gtacacaatgggtgaagaattattgtttcttttctttcttatgtatgttccctagttgaatttggttattggtgcagtatatatgtaaatgactattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTG

upper sequence: GRMZM2G128114_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv19s0085g00880.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------gtacttgatttatatcatccactgatgttagttgatggttgtgattttgaggt--tcttttggggcctgattggtttgtacttctctgttcagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGCATATATGGTGATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGG
                             |||| |    ||  |     |      | ||  |  |    ||||     |  |  | ||   | ||      | | |  ||  | | ||||| || ||||| ||    || || || |  | ||||||||| ||||| || ||||||||||||||||||||  || |  || |||||||| |  || | |
gtatgccattctcaactttgctttaagaaacttaaggagtagtaattg-tatcacaaatttttcttcactatttgtcattaattctctgcaacatgtgacactggaaagtcaatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149000518|gb|EE037700.2|EE037700
EST:     TTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG                         GTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
genomic: TTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAGgtacttgatt ... ctctgttcagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
EST: gi|211509962|gb|FL438235.1|FL438235
EST:     TTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG                         GTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
genomic: TTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAGgtacttgatt ... ctctgttcagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
EST: gi|78107121|gb|DV525539.1|DV525539
EST:     TTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG                         GTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
genomic: TTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAGgtacttgatt ... ctctgttcagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
EST: gi|67026356|gb|CO455105.1|CO455105
EST:     AAGAAGTCCTTGGTGAG                         GTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
genomic: AAGAAGCCCTTGGTGAGgtacttgatt ... ctctgttcagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
EST: gi|149087724|gb|EE177069.2|EE177069
EST:     TTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG                         GTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
genomic: TTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAGgtacttgatt ... ctctgttcagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
EST: gi|67040351|gb|CO466606.1|CO466606
EST:     TTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG                         GTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC
genomic: TTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAGgtacttgatt ... ctctgttcagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgtgattttgaggttcttttggggcctgattggtttgtacttctctgttcagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGCATATATGGTGATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGG
                          gcctgat  putative branch site (score: 4)
                                          cttctctgttc  putative PPT
     tgatttt  TA-rich tract