Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatacacctgcacatctataattcaattctcaatatctatgaatattgttttgtttgaattcattaatagttctgcacttttcatgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCTGATGGGGAAGTTGAATATGCAAAAACTATCTGTGCTTTTGTGCGGGATA

Basic information

species Zea mays
transcript GRMZM2G128080_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128080_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g16100.1 (Oryza sativa), 3'ss of exon 5
gtaaatacacctgcacatctataattcaattct-caatatctatgaatattgttttgtttgaattcattaa---tagttctgcacttttcatgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCTGATGGGGAAGTTGAATATGCAAAAACTATCTGTGCTTTTGTGCGGGATA
|||||| || |||    || | |||| | |||| | | || |     | ||  | || ||||| |  || |   || |||||  || |  ||   ||||||||| ||| |||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||  || ||||| ||||| || ||||
gtaaatgcaactg----tccaaaatttagttctgctaaatatccttttctttgtctgcttgaagttgttgagggtatttctgtgctgtcaatatgttagGTTGCCGATCTGTCAGGAGAGCTGATGAGGCTTGCAATTGGCCGTATATCTGATGGAGAAGTTGAATATGCCAAAAACATTTGTGCATTTGTACGTGATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191937|gb|FL162063.1|FL162063
EST:     GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCCGAGAGCTTATGAAGCTCGCAATAGGCCGTATATCT
genomic: GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|211191936|gb|FL162062.1|FL162062
EST:     GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCNGAGAGCTTATGAAGCTCGCAATAGGCCGTATATCT
genomic: GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|211086793|gb|FL353523.1|FL353523
EST:     CTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
genomic: CTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|71425688|gb|DR806834.1|DR806834
EST:     GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
genomic: GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|71425689|gb|DR806835.1|DR806835
EST:     GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
genomic: GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|211109868|gb|FL467765.1|FL467765
EST:     TTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
genomic: TTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|60356030|gb|DN223003.1|DN223003
EST:     GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
genomic: GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|166655787|gb|EG083444.1|EG083444
EST:     GCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATTGGCCGTATATCT
genomic: GCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|211191938|gb|FL162064.1|FL162064
EST:     GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTANGG                         GTTGCTGAATTGTCCGGAGAGCTTATGAGGCTCGCAATANGCCGTATATCT
genomic: GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|211191935|gb|FL162061.1|FL162061
EST:     GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCNTTTAGGG                         GTTGCTGAATTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
genomic: GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|78124658|gb|DV543042.1|DV543042
EST:     GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATTT
genomic: GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|4804244|gb|AI666110.1|AI666110
EST:     TACAGTTAAATGTGCTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
genomic: TACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|60343645|gb|DN210618.1|DN210618
EST:     GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
genomic: GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
EST: gi|71328612|gb|DR800970.1|DR800970
EST:     GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGG                         GTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT
genomic: GTCAATCTGTTGAGCCCTTACAGTTAAATGTGCTTGACTATCTTTTAGGGgtaaatacac ... catgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgaatattgttttgtttgaattcattaatagttctgcacttttcatgccttagGTTGCTGATTTGTCCGGAGAGCTTATGAGGCTCGCAATAGGCCGTATATCTGATGGGGAAGTTGAATATGCAAAAACTATCTGTGCTTTTGTGCGGGATA
                        cattaat  putative branch site (score: 3)
                                      cacttttc  putative PPT
     atattgttttgtttga  TA-rich tract