1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctattcttgatttgattagttcaattgctggcatttttttaaacagatagtcattacatgctgagaaacatttaacttttgcatatgcttgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATCATCAGCAGATCCAGGCTATTCTTATTTTGGTGCCCCGGACTTTGATCA
species | Zea mays |
transcript | GRMZM2G128080_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATEST: gi|71425688|gb|DR806834.1|DR806834
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATEST: gi|71425689|gb|DR806835.1|DR806835
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATEST: gi|211109868|gb|FL467765.1|FL467765
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCAAGAATEST: gi|60356030|gb|DN223003.1|DN223003
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATEST: gi|60353914|gb|DN220887.1|DN220887
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCTTCTGCTAGAATEST: gi|78124658|gb|DV543042.1|DV543042
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTTTGCTAGAATEST: gi|211303843|gb|FL436411.1|FL436411
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATEST: gi|4804244|gb|AI666110.1|AI666110
genomic: GAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATEST: gi|71328613|gb|DR800971.1|DR800971
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATEST: gi|60343645|gb|DN210618.1|DN210618
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATEST: gi|101382451|gb|EB813281.1|EB813281
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAAT
EST: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATG CTTGCTTCAGTGTTCATGTGAGAAGGT-CAGAGTACATTCCTCTGCT
genomic: GAAGAAGAAAATGGAGGTCATGCTGCAAAGTGTAGTAAAAATTGAGAATGgtattatttc ... tgtgtttcagCTTGCTTCAGTGTTCATGTGAGA-GGTTCAGAGTACATTCCTCTGCT
agatagtcattacatgctgagaaacatttaacttttgcatatgcttgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATCATCAGCAGATCCAGGCTATTCTTATTTTGGTGCCCCGGACTTTGATCA
atttaac putative branch site (score: 74)
aaacatttaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctattcttgatttgattagttcaattgctggcatttttttaaacagatagtcattacatgctgagaaacatttaacttttgcatatgcttgtgtttcagCTTGCTTCAGTGTTCATGTGAGAGGTTCAGAGTACATTCCTCTGCTAGAATCATCAGCAGATCCAGGCTATTCTTATTTTGGTGCCCCGGACTTTGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - tgatttg
- - - - - - - - - - - - - tgctggc
- - - - - - - - - - - - - - - - - - - - -aaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaca