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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcccttttccccacttctatctttgttcatatcaatgttttgtgttcttggtccgtgccttttgaccacacatcatttgcttataatattttagctgtatctttcaccagGACAGCACAAAATGCTCATATCTTCACCTCCTGTCGCTGTGTTTCGACACCCTTCTTGCCAGTGATCTTAGCTTCTCGAGGTACAGCGAATTTGCATTGG

Basic information

species Zea mays
transcript GRMZM2G127754_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127754_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g67870.1 (Oryza sativa), 3'ss of exon 9
gtctgcccttttccccacttctatctttgttcatatcaatgttttgtgttcttggtccgtgccttttgaccacacatcatttgcttataatattttagctgtatctttcaccagGACAGCACAAAATGCTCATATCTTCACCTCCTGTCGCTGTGTTTCGACACCCTTCTTGCCAGTGATCTTAGCTTCTCGAGGTACAGCGAATTTGCATTGG
               ||   |          |||    |     | |  ||||  |   | |         | ||  ||||  |   ||| |   || ||    | || || ||| ||||| |||| ||||||||||||||| ||||| || ||||||| |||||||  || | ||||||||||| ||||| ||                    
------------aggcataacaggggggaaacatggggactacatctcgtcttcttttatactcaactgagaaaccccattacc--gtaacagcgtaact----catttac-agggcagCATAAAAGGCTCATATCTTCACCACCTGTTGCAGTGTTTCCACACCCTCTTT-CAAGTGATCTTAGTTTCTCCAG--------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccttttgaccacacatcatttgcttataatattttagctgtatctttcaccagGACAGCACAAAATGCTCATATCTTCACCTCCTGTCGCTGTGTTTCGACACCCTTCTTGCCAGTGATCTTAGCTTCTCGAGGTACAGCGAATTTGCATTGG
    ttttgac  putative branch site (score: 3)
                                            tctttcacc  putative PPT
                atcatttgcttataat  TA-rich tract