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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaagcaattgcagttgcaggcttcagtagtgtgctctcctctcttcatcttcaccgccctgccctgactctgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTGGGGGTCTACTCGGAGGGCTGCGGCCTCAACAAGGTGCTCATGTCATGGG

Basic information

species Zea mays
transcript GRMZM2G126900_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126900_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g36560.1 (Oryza sativa), 3'ss of exon 6
-------------------------------gtagtaagcaattgcagttgcaggcttcagtagtgtgctctcctctcttcatcttcaccgccc-tgccctgactctgt-tgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTGGGGGTCTACTCGGAGGGCTGCGGCCTCAACAAGGTGCTCATGTCATGGG
                                 |  || |||  || || |  || |  || |||| |||           |     || |    |    || ||     || ||||||||||||||||||||| |||||||  ||||| ||||||||||||||||| |||| |||||| |||||||| |||||  |||| || |||||||| ||||
gtaaccaatgaatcatctagcaaactgttcaagacaaatcaaaagc-gtagatggatcaagcagtgagctagtggtctaagactgaaactgaaaatattttgtctgaaaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTTGGGGCCTACTCCGAGGGCTGTGGCCTTGACAATGTTCTCATGTCCTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31363556|gb|CD447913.1|CD447913
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|67014192|gb|CO442941.1|CO442941
EST:     CACCTTCCCCGTCGGCTGCGCATACGACGAGTGGCA-CGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCCGA-GCTCAAC-CCAAGTT
genomic: CACCTTCCCCGTCGGCTGCGCATACGACGAGTG-CAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCC-GAAGCTCAACACCAAGTT
EST: gi|78084506|gb|DV512899.1|DV512899
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|88752150|gb|DY536291.1|DY536291
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|78076467|gb|DV504901.1|DV504901
EST:     TCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: TCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|76289997|gb|DV029565.1|DV029565
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|148941675|gb|EC886622.2|EC886622
EST:     CAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: CAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|78119916|gb|DV538300.1|DV538300
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|149042044|gb|EE047019.2|EE047019
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|148960892|gb|EE011574.2|EE011574
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|60339537|gb|DN206510.1|DN206510
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|76923451|gb|DV169494.1|DV169494
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|15554177|gb|BI644175.1|BI644175
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|93281927|gb|EB674191.1|EB674191
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|93284184|gb|EB676448.1|EB676448
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|60397791|gb|DN230607.1|DN230607
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|78112469|gb|DV530863.1|DV530863
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCCGA-GCTCAACACCAAGTT
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCC-GAAGCTCAACACCAAGTT
EST: gi|60342265|gb|DN209238.1|DN209238
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|15057218|gb|BI361190.1|BI361190
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|93016474|gb|EB641994.1|EB641994
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|78076468|gb|DV504902.1|DV504902
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|60359616|gb|DN226589.1|DN226589
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|78119915|gb|DV538299.1|DV538299
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|148941676|gb|EC886623.2|EC886623
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|40303359|gb|CK347746.1|CK347746
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|14996904|gb|BI319057.1|BI319057
EST:     TGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: TGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|101386278|gb|EB815159.1|EB815159
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGGAGA-CCCCGACTACCACACCCCGAAGCTCAA
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGG-AGAACCCCGACTACCACAACCCGAAGCTCAA
EST: gi|67041064|gb|CO467319.1|CO467319
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|149010866|gb|EE042255.2|EE042255
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|78088525|gb|DV516918.1|DV516918
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|76923453|gb|DV169495.1|DV169495
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|154130490|gb|EC872226.2|EC872226
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|149100878|gb|EE186973.2|EE186973
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|50333620|gb|CO528746.1|CO528746
EST:     AGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: AGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|71325953|gb|DR799659.1|DR799659
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|60396286|gb|DN229155.1|DN229155
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|93281928|gb|EB674192.1|EB674192
EST:     CACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCCACTTCA-G                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTT
genomic: CACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCC-ACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTT
EST: gi|60347921|gb|DN214894.1|DN214894
EST:     CGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: CGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|14996932|gb|BI319072.1|BI319072
EST:     CGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
genomic: CGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTG
EST: gi|211354362|gb|FL217076.1|FL217076
EST:     CACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAAYG-CNCACTTCAAG                         TACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTT
genomic: CACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTC-CACTTCAAGgtagtaagca ... tgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTT
EST: gi|78114314|gb|DV532703.1|DV532703
EST:     ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCTAG                         TACTTNCA-GGAGAACCCCGACTACCACAACCC
genomic: ACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagca ... tgttgcgcagTACTT-CAAGGAGAACCCCGACTACCACAACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtgtgctctcctctcttcatcttcaccgccctgccctgactctgttgcgcagTACTTCAAGGAGAACCCCGACTACCACAACCCGAAGCTCAACACCAAGTTGGGGGTCTACTCGGAGGGCTGCGGCCTCAACAAGGTGCTCATGTCATGGG
                                    ccctgac  putative branch site (score: 3)
                                          ctctgtt  CT-rich tract