1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ccttttcatgctgtgtagggttttatattcatggaataatttttccttgtgcagtgtactatttgcatgctttcttaggtcataatttcttgttatacagGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAG
species | Zea mays |
transcript | GRMZM2G126266_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAG GTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAGEST: gi|211421443|gb|FL301679.1|FL301679
genomic: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAGgcgagataag ... tgttatacagGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAG
EST: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAG GTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAGEST: gi|211421445|gb|FL301681.1|FL301681
genomic: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAGgcgagataag ... tgttatacagGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAG
EST: AAGAAAGATGTGAGGWAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAG GTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAGEST: gi|211421444|gb|FL301680.1|FL301680
genomic: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAGgcgagataag ... tgttatacagGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAG
EST: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAG GTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAGEST: gi|211120827|gb|FL155530.1|FL155530
genomic: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAGgcgagataag ... tgttatacagGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAG
EST: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAG GTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAGEST: gi|211421446|gb|FL301682.1|FL301682
genomic: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAGgcgagataag ... tgttatacagGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAG
EST: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAG GTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAG
genomic: AAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAGgcgagataag ... tgttatacagGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAG
cttgtgcagtgtactatttgcatgctttcttaggtcataatttcttgttatacagGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAG
tttcttgtt CT-rich tract
ataatttcttgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttttcatgctgtgtagggttttatattcatggaataatttttccttgtgcagtgtactatttgcatgctttcttaggtcataatttcttgttatacagGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - ttcatgc
- - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgc