1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtactcttatcactatatcatgatacattgatcatgtgttaatccactgcttaatgtaaatattatttatatatattttttttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTACGAAAAAAG
species | Zea mays |
transcript | GRMZM2G125243_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCACAGCATCTGATTCTAGTGACAAATCAAGGGACAAACTAGATCAGAAG ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGTTTAEST: gi|211164177|gb|FL132752.1|FL132752
genomic: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAGgtactcttat ... tttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTA
EST: CCACAGCATCTGATTCTAGTGACAAATCAAGGGACAAACTAGATCAGAAG ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGTTTAEST: gi|211164169|gb|FL132744.1|FL132744
genomic: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAGgtactcttat ... tttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTA
EST: CCACAGCATCTGATTCTAGTGACAAATCAAGGGACAAACTAGATCAGAAG ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGTTTAEST: gi|211164175|gb|FL132750.1|FL132750
genomic: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAGgtactcttat ... tttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTA
EST: CCACAGCATCTGATTCTAGTGACAAATCAAGGGACAAACTAGATCAGAAG ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGTTTAEST: gi|211164176|gb|FL132751.1|FL132751
genomic: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAGgtactcttat ... tttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTA
EST: CCACAGCATCTGATTCTAGTGACAAATCAAGGGACAAACTAGATCAGAAG ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGTTTAEST: gi|18660490|gb|BM500889.1|BM500889
genomic: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAGgtactcttat ... tttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTA
EST: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAG ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTAEST: gi|211164172|gb|FL132747.1|FL132747
genomic: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAGgtactcttat ... tttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTA
EST: CCACAGCATCTGATTCTAGTGACAAATCAAGGGACAAACTAGATCAGAAG ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGTTTAEST: gi|211164171|gb|FL132746.1|FL132746
genomic: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAGgtactcttat ... tttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTA
EST: CCACAGCATCTGATTCTAGTGACAAATCAAGGGACAAACTAGATCAGAAG ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGTTTAEST: gi|211164170|gb|FL132745.1|FL132745
genomic: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAGgtactcttat ... tttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTA
EST: CCACAGCATCTGATTCTAGTGACAAATCAAGGGACAAACTAGATCAGAAG ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGTTTAEST: gi|211164174|gb|FL132749.1|FL132749
genomic: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAGgtactcttat ... tttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTA
EST: CCACAGCATCTGATTCTAGTGACAAATCAAGGGACAAACTAGATCAGAAG ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGTTTA
genomic: CCACAGCATCTGATTCTAGCGACAAATCAAGGGACAAACTAGATCAGAAGgtactcttat ... tttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTA
gtgttaatccactgcttaatgtaaatattatttatatatattttttttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTACGAAAAAAG
tatttttttt CT-rich tract
ttaatgtaaatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcttatcactatatcatgatacattgatcatgtgttaatccactgcttaatgtaaatattatttatatatattttttttaaaacagACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTACGAAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC