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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggttgtttgagtcctacacaattatacacttcattaaacttttatcaaaagatttactggttttatgtgtttattcttttacagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG

Basic information

species Zea mays
transcript GRMZM2G124091_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124091_T04 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g55974.1 (Oryza sativa), 3'ss of exon 6
gtttggttgtttgag-tcctacacaattata-cacttcattaaacttttatcaaaagattt-actggttttatgtgtttattcttttacagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG
||||||   | | |  ||||||| | ||| | ||  |||||||  |    | | ||| |   | |  | || |||  |  |   ||| |||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| |||
gtttggacttctaatctcctacaaacttaaagcatctcattaatttgcctttataagctaagaataatcttgtgttatcttctctttgcagAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAG

upper sequence: GRMZM2G124091_T04 (Zea mays), 3'ss of exon 6
lower sequence: AT3G48540.1 (Arabidopsis thaliana), 3'ss of exon 6
---gtttggttgtttgagtcctacacaattatacacttcattaaacttttat-caaaagatttac------tggttttatgtgttt--attcttttacagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG
          |    ||   || |   | | |    | |     | || | |    | | ||||       | ||||| ||    |  | ||| || |||||  | ||||| || |||||||| |||||||||||||||||||||||| | |||
tatagaaaacttagggaactctgctgcagtttctgttccgaagtatttgtgtgtggatggtttatatgagtttgttttgtgctcctcgaatctcttgcagAAGCTTTATGTGACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAG

upper sequence: GRMZM2G124091_T04 (Zea mays), 3'ss of exon 6
lower sequence: PP1S426_43V6.1 (Physcomitrella patens), 3'ss of exon 7
------------------------------------------------------------------gtttggttgtttgagtcctacacaattatacacttcattaaacttt-tatcaaaagatttactggtt---ttatgtgtttattctttta-------cagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG
                                                                  | ||   |  |||| |||   |   || |||  |||   |||   | ||  |   | | |    ||    | |  ||  ||   | | |       |||| | |||| || ||| | ||||| |||||||||||||||||||| |||||||||
gtaagcttccaggttgtgtcatgcttggcctgattagaaccagtttttcgaacttaaggtgaaaaagctttagtagttga-tccagaagctttttacttttctaaaaatagtatactagtcgttgtttctgtcaagtaagatgcataccttgtgaaatgtggcagAGACTGTACGTGACCCTCTTCCCTTGCAATGAATGTGCCAAGATAATTATTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattaaacttttatcaaaagatttactggttttatgtgtttattcttttacagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG
                                        tttattctttt  CT-rich tract
     taaacttttatcaaaa  TA-rich tract