1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagttattgctctgtaacttgtagtcacttaggcatactatatatcccttctcttttgtttctgtaataaattgggagagttgttttttgagtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATAGTGATATGATTTCAAGGCTAGAAGCGGCTGAGTCAAAGCTGCAGGAGT
species | Zea mays |
transcript | GRMZM2G123624_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAATCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|76935690|gb|DV174431.1|DV174431
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|149085095|gb|EE174602.2|EE174602
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|71765024|gb|DR962961.1|DR962961
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|71768414|gb|DR966351.1|DR966351
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|71434707|gb|DR815757.1|DR815757
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|211244356|gb|FL352760.1|FL352760
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|20506722|gb|BQ279315.1|BQ279315
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAATCTGAAGCGCAG GCTATTGAAGCTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|71328410|gb|DR800842.1|DR800842
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|74244904|gb|DT652818.1|DT652818
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|74239024|gb|DT646938.1|DT646938
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATEST: gi|71328409|gb|DR800841.1|DR800841
genomic: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
EST: CCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
genomic: CCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcga ... agtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAAT
cccttctcttttgtttctgtaataaattgggagagttgttttttgagtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATAGTGATATGATTTCAAGGCTAGAAGCGGCTGAGTCAAAGCTGCAGGAGT
tttctgtaataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttattgctctgtaacttgtagtcacttaggcatactatatatcccttctcttttgtttctgtaataaattgggagagttgttttttgagtcctgcagGCTATTGAAGTTTCAAAACGCCAAATGAAACTAAGAGAAGCATCTGGAAATAGTGATATGATTTCAAGGCTAGAAGCGGCTGAGTCAAAGCTGCAGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - -tgctctg
- - - - - - - - - - - - - - - - gcatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttt