1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaccaaactaacgatttactctgcatcttttttttcttcttcttctttggccaatttcttggatcgtatctgttgtatatatataataaccggtgacaggattctgcctgtgttcttgcatgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGGAGATCTCCAAGATGCCCAGCCTTGCGTTCACCATCGCAAACAAGACCT
species | Zea mays |
transcript | GRMZM2G123029_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAATCAACAGTCAGCTGCCAGEST: gi|149100422|gb|EE186497.2|EE186497
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|110208372|gb|EC890269.1|EC890269
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|148999547|gb|EE036519.2|EE036519
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|211114340|gb|FL479352.1|FL479352
genomic: AACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AG-TCCGCGAAAACAAGACCAAGGAGYTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|32913325|gb|CF018137.1|CF018137
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|7204603|gb|AW559186.1|AW559186
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|149078277|gb|EE167036.2|EE167036
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|211417815|gb|FL246184.1|FL246184
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: GGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|93012558|gb|EB638078.1|EB638078
genomic: GGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|211453148|gb|FL447178.1|FL447178
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|6827002|gb|AW330645.1|AW330645
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGNCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|45567994|gb|CK985848.1|CK985848
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|78109241|gb|DV527657.1|DV527657
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGGGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGTTGCCAGEST: gi|149097402|gb|EE183255.2|EE183255
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|40303709|gb|CK348096.1|CK348096
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|6993891|gb|AW453105.1|AW453105
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: GCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|148980773|gb|EE027343.2|EE027343
genomic: GCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|18180292|gb|BM381502.1|BM381502
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: GCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|211489971|gb|FL475496.1|FL475496
genomic: GCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AACAAGACCAAGGAGCTCATACTGCAGTACGCTACCCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|149066691|gb|EE286828.2|EE286828
genomic: AACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|110520668|gb|EE024852.1|EE024852
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|211453149|gb|FL447179.1|FL447179
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: CAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|211401889|gb|FL450336.1|FL450336
genomic: CAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|60358971|gb|DN225944.1|DN225944
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|6695716|gb|AW288794.1|AW288794
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|5510772|gb|AI857156.1|AI857156
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAACCAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|91876727|gb|EB406684.1|EB406684
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|91876845|gb|EB406802.1|EB406802
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGEST: gi|148987680|gb|EE031561.2|EE031561
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
EST: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAG CTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
genomic: AGCTCCGCGAAAACAAGACCAAGGAGCTCATACTGCAGTACGCTAACCAGgtaaccaaac ... catgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAG
tgtatatatataataaccggtgacaggattctgcctgtgttcttgcatgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGGAGATCTCCAAGATGCCCAGCCTTGCGTTCACCATCGCAAACAAGACCT
taataac putative branch site (score: 1)
ttcttgc putative PPT
atatataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccaaactaacgatttactctgcatcttttttttcttcttcttctttggccaatttcttggatcgtatctgttgtatatatataataaccggtgacaggattctgcctgtgttcttgcatgcaccagCTGTGTGAGCGTCTGCCGAGCCCCAACGGAGAGTCAACAGTCAGCTGCCAGGAGATCTCCAAGATGCCCAGCCTTGCGTTCACCATCGCAAACAAGACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG